NONHSAT144676
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144676 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
3101 nt |
Genomic location |
chr17+:116623..119723 |
Exon number |
1 |
Exons |
116623..119723 |
Genome context |
|
Sequence |
000001 TCCTGTGAGG CTTCTACACA ATTACCGGTA AGGAGCATTT GCCAGTCGCA GAGGGAGGTG TTGCCCAACG CTGGCTCCCG 000080
000081 ATGCCTGTAG GGCTGCGTGC CCCTGGATCA GGGAGAACCC TGGGACAGGT CGCCAAGCTT CATCTCTGGC CTCACCCTGC 000160 000161 CTTGTAGCCC AGCCTCGGGG TCTGTGCCCC GTGGGCACCC CATGGCCTTT GCATCATCTC TCACGTCACC TGTGATGAGG 000240 000241 AAAGGTCCCT ACAAGCTGCT GAGAACAGGG GCCCCTGTCT TCCCTCTGGT CCTGCGCGCC ATCCTCTCCC TTTGTCCAGA 000320 000321 TGCTCTTGTA AGCTCAGCAA ATGCATGGAG GCTAATGACA CTTTCATCTG CTGCTCTTAA TGACTTGTGT TGTCAACATT 000400 000401 TGACAGACTC CCCTCACTTT CAACTGGCAC GCGGCATGAA ATCCTTTGGA GCCCCAGTAC TGAGGCTGCT CTGACACCGG 000480 000481 TTTGAGAGAG GGCAGGCCTG TTACAATGGT GATTGGCTGC GAAGCCGCCT CTGTTCCCAG ACGGAGTGGG CTGCATGCAG 000560 000561 GAAATGAATA GGGGCTGGAG GCGGAAAATT GGACAGGCCA ATTAGACCGA GCCAGGTCTT TTCAGACGAG CGTCATGATT 000640 000641 TTGATTCAAT TCCCAGGACA ACAAATGTGC CTGTGTTTAA ACACAGTCTC AGAAATATGT TCTCCCAAGC CAAAGTGAAA 000720 000721 CCCTGTCTGG GCTGACCCCA ATCGGCAGGG CTCGAGGGTG GTGCAGAGCG GGCGGCCTGC ATCTGGGGAC ACTTTTTTTG 000800 000801 ATTACGTATT TGATTAGTGG CTCATTTCCG ACGGGTCTTG TTCCCTGCTG GGGAAAGCCT CTAGTTCTGA AGTCCCATTG 000880 000881 CTTCCTCTGT CTTCCACAGT CATCACTGTC TCCCTGACCA CGTTTAGCTC TTTGGTTTTT CCCTGCATTC TGGGAGATCC 000960 000961 TACAGGTCTC TCCAAATCAC TGATTCAAGC TTCTTATTTT TTGCCTGATT TTAGCGACCT CCTCTCATCT TTTGGGTGTA 001040 001041 TGCCCGTGAA AGCTAGCAAA TCTACAAAAG TGTATTTCAT ACAGACATTT CAAAGAATCA TATTCCAGTA AATACCTGTG 001120 001121 AGCTCATCAA GAAATAAAAT GGTGCTGGAT GTGAGAAGCT CCCGTAAACC CACCCTCCCT CTCAGAGGTA ACCACCATCT 001200 001201 GGAATTTTGT ATTAAGCAAT CTCTTGCTTT TCTAGTTTAA AAAAACCTTG TATGTATGTA TGCATTTCTA AATAAATACA 001280 001281 GTTGACCCAT GAACCACATG GGCTGGAACT GCACAGGCCC ACTCCTAGCT GGATTTTCCT CTCCCTCCAT CACCCTTGTG 001360 001361 ACAACGAAAG CAACCCCTCC TCTTCCTCCT CCTCATCTCC CCGTCACCCC TGTGACAATA AAACCAACTC CCCTTCCTCC 001440 001441 TCAGCCTACC CAACACGAAG ACGATGAGGA TGAAGACCTT CACGATGACC CACTTCCCCT TCATGAAGAG TAAATATATT 001520 001521 CTCTCTTCCT CATGATTTTC TTAATAACAT TTTCTTTTCT CTAGCTTATT TTATTGTAAG AATATAGTAT ATAATGCATA 001600 001601 TAATATACAA AATATGTGTT AACTGAATGT TTTTTATTGG TAAGTCTTCC AGTCAACAGT AGACTATTAG TTAAGTTTTG 001680 001681 GAGAGTTAAT AGTTATATTA AGATTTTAAG TATGTTTTTG GGTTTTTTTT TTTTTTTTTT TTTTTTTGAG GCAGGATCTC 001760 001761 ACGCTGTTGC CCAGGCTGAA GTACTGTGGC ACCATCTCGG CTCACTGCAG CCTCCGCCTC CCAGGTTCAA GCAATCCTCC 001840 001841 GACCTCAGCC TCCCAAGTAG CTGGGGCCAC TAGACATGCC CCCACTACAC CAGGCTAATT TTTAAAAACT TTTTGTAGTG 001920 001921 ACAGGTTTCG CCATGTTACC CAGACTGGTC TCAAACTCTG GGGCTCAAGC AATCCTCCCG CCTCAGCCTC CTGAGTAGCT 002000 002001 GGGACTATAG GTTCATGCTA CCAGGCCTGG ATGATTTTTT ATTTTTTATT TATTATTATT TTTTTGAGAC GGAGTCTCGC 002080 002081 TCCGTCACCC AGGCTGGAGT GCAGTGCCGC GATCTCGGCT CACCGCAAGC TCTGCCTCCC GGGTTCACGC CATTCTCCTG 002160 002161 CCTCAGCCTC CCGAGTAGCT GGGACTACAG GCGCCCGCCA CCACGCCTGG CTAATTTTTT GTATTTTTAG TAGAGACGGG 002240 002241 GTTTCACCGT GTTAGCCAGG ATGGTCTCGA TCTCCTGACC TCATAATCCG CCCGCCTTGG CTTCCTAAAG TGCTGGGATC 002320 002321 ACAGGCGTGA GCCACCGTGC CTGGCCGATT TTTTATTTTT TAGAGACGAG GGATCGCCAT GTTGCCCAGG CTGGTCTTGA 002400 002401 ACTTCTGTGG CCTCAAGCAG TCCTCTTGCC TCAGCCTCCC AGAGTGCTGG GTGTGAGCCA CCGTGCCTGA CCTACTTATT 002480 002481 CTTTTTCCTG TTCAGCATCT AGTGTATGAT ACGATTTGCT TATTTGTTTA TGTTTCATCG TCTGTTCCCC ACCCTCAGCC 002560 002561 CTGGCCCCCT TGCTGGAACG CAAGCTCCAG GCAAAGCTAT TTCACCGTTG CTGTTTTCCA AGGGCCTCGA ACAGTGCCCG 002640 002641 GCACATAGCA AATCCTCAGT GAACATTAGA GGAATAAGTG ATTCAAGAAT AGAGCTGTTA GAAGGTGTTC TGGAGGAAGA 002720 002721 CGCATCCGGC TTCATCCCTG GCACCATCAA TTACTACCCA ACGTCTTTGG GCAAGTGACC TCTTCTCTCT AAGCTTCAGT 002800 002801 TTCTCCACCT GTCACAGAGG ACAATGGGCT CCCGTGGGGA TGAAGCGAGA TGATCATGGC CTGGCCCTTA GTGGGCACTC 002880 002881 AGCTCACATC TGCTATGAAC GATGGGAGTC CTTCGGTGTG CCTGTGTGTG AACGATGAAC TCACGGACTG GAGCACTGTG 002960 002961 CTGAAAGAGT CAGCAGCCTC TTGGATCTCT CAGTGCCTCA GAGGCAAACT TCTCCAGTGC ACAGACGTGG GCTCAGGTAG 003040 003041 ACGCCCCAGG CAAGGGGCAG GGGAAGATGG GATGGCTCAG TCCATCTGCA GGGGTGCAGT G |
Predicted Small Protein
Name | NONHSAT144676_smProtein_2030:2254 |
Length | 75 |
Molecular weight | 8173.5568 |
Aromaticity | 0.108108108108 |
Instability index | 74.2231081081 |
Isoelectric point | 10.7177124023 |
Runs | 12 |
Runs residual | 0.019512195122 |
Runs probability | 0.0444488606254 |
Amino acid sequence | MIFYFLFIIIFLRRSLAPSPRLECSAAISAHRKLCLPGSRHSPASASRVAGTTGARHHAW LIFCIFSRDGVSPC |
Secondary structure | LHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHLLLLLLLLLLLLHHHHLLLLLHHHHHE ELEEEELLLLLLLL |
PRMN | - |
PiMo | - |