NONHSAT145163
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145163 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2425 nt |
Genomic location |
chr17+:5013276..5017672 |
Exon number |
3 |
Exons |
5013276..5015413,5016681..5016747,5017453..5017672 |
Genome context |
|
Sequence |
000001 cggggttcta gcgattctcc tacctcagcc tcccaagtag ctgggattac aggcgcctgc caccacatcc agctaatttt 000080
000081 tttgtatttt tagtagggac ggggttttgc catattggcc aggctggtct tgaactcctg acctcaggtg acccacccac 000160 000161 ctcggcctcc caaagtggta ggattacagg catgagccac cgcgcccgtc cTCCTCTTCT TTTTTCATTC ATTAAACATA 000240 000241 TACATATACT CAACACTCCA AAGAGCCAAA CCCTGTCCTA TGCCCTGTAG TCCCGCTTTT TCTTCCACCC CTCCCCAGAA 000320 000321 TTCTGCTGCA CTAAGTCAAT GTTTTTGAGA AACTTGCACC GTGGTAGAAA CGGGGATGTA AAGTGGTTTT CTATAATACA 000400 000401 ACTAATTAAA TGCCATTGAC AGGAAAAATG TATCAAGAAA AAAAAAGTTC TGGGGGCCTA TGGGAAGAAA TGACTATTGG 000480 000481 AAGAAATAAG TTTGAAGCAA AACCCAAGTT TCCAGATGCA GAGCCCAGAG CCGAGCAGCT TTCAGTGCAA GGTGGAATGT 000560 000561 GTTGGGGAGG CAGCCTCCTC TGAGATGGCT CCTCCCTGCT TTCAAAAATT TCTGAAGTAG TAGCTACAGC AAAAGAAAAA 000640 000641 TATAAGTCCC CTTTAAGGAG CTGGATCTCA TTCAAATGCC AAAGCCCTAT TAAGGGGCAG CTATGAACAA GTCTCGGGTA 000720 000721 CAGTGGCCTG CGTCAAGGAA ATCTAACAGG tgtaaaccaa aaaagcatct gagataggtc tcaaccaatt taggggttat 000800 000801 tttgctaagg ttgaggatgc acccaggaaa aagacacaca agccacagta ggatccgtgg ctcgcacttt taccaaagag 000880 000881 ggttttgagg gcttcaattt aatggggaga aagctggcag gaggggaagg aggagagaag agggagggta tgtggtgagg 000960 000961 taagtggcca cattcttgtg aggatttgat tagagctcac tgaatccaca tgttgcacgt gaaaagagga agtcaattat 001040 001041 gaatttgtct cgtgctcagt aaatctgcat tttacacaag ataaggtaga catacagtag aggaagaagt caaatatgct 001120 001121 ttgtctctgg gtgggtggag gaacgatttc tagtcttgtc cggtgaagct cggctgttcg tttccattgc cagggtgagg 001200 001201 gaggccacct gggggcatat gttgctttct atcttgcagc tatcggttta ggaacaaaag gaaaagcagt ttttttccgt 001280 001281 gactcagttt ccaagcttaa cttttccctt tgtcatagta agtttggggt cctgagattt tattttcctt tcacaCAGGG 001360 001361 AAGGAGGTGG AACGCATCAG AGGCCACGAA AGGAGCACAA AGGGGGACCG CTGGCCTAAG ACAAAGGAGG CGCGAGGAAA 001440 001441 AACGCGGAGC TCGCGTCTCC CAGGGTGATG CCCGGCGCCG CTGGCCCCAG CAAAACTTCT CTACCCCGGC CTCGGGCAGG 001520 001521 TGCCCGCCCG GGGAGGGGGC TGTCGTCCAG GCCAGGTACA ACTCCCCTTC CCACCCTTCA CTCCCTACCC AAGGGTCTCG 001600 001601 AGAAAAGAGA AGAGGAACAT CAAGACCCCC CTCCACGGCA CGTGACGCGA CGCAACGCAG GTAGCGCAGC GCGGGCACCA 001680 001681 CGGGCAACCC AAACCCCTCT CCACACACAA CCGCGGAGCT GCCTGCCAGG CCTGCTCACT GCAGAGCCGC CGCTGCCTGC 001760 001761 GGGACGGGCA AAAGCCAAGC CGCCAGGTGG ACCTCGGGGA AGCCGCCGCC AACACTCACC TCACAGGACC AGGAGGTTCC 001840 001841 ATCGGGGCGC TGCCGCGAAT CGCGCCACTT ACAGCCCTCA CCCCAGGGGC AGGTTTGCGC CTGCGCAGGT CGCAGCCTCG 001920 001921 GCCTCCAACT CCCAGAATCC TCCTCGCCGC CGGCTTCCGT TCGCGGACTT TGGCCCAGGC GCGTGGGCGC TGCCGAGAGG 002000 002001 CTGGGAGCCC GGGAACCGGT TCCTGGACTT GAGCGGAGCG AGAAAGAGCG CGCCGCCTGC ACGACTGGAC TGGAGCGGCC 002080 002081 GGGTGCCCTG GAGGCCCCTG GGAATTGCAG TCCTTGCGCA GGTGGAGAGT GAGCCCTTat gagaaaactc aagactcaga 002160 002161 aacaataaag gttacagaga tgaaattgac agagcctgaa tttcaGGTTA TGATTCTGTA TGGTTTCTTT GGTGCTGCAT 002240 002241 TAGACCTGAG CTCTGATTGA AAATTCTTCC ACGCTCGCTA CATTCCAAAA CTTTATCTCC AATATGAATT TCCAGATGCC 002320 002321 TCACAAGGTC TGAGCTCCAT CTGAAGGCTT TCCCATGCTT GTCACATTCA TAGGGCTTTT CTCCACTATG AATTCTATGA 002400 002401 TGTCGAATAA AGTGTGAGCT CTGAT |
Predicted Small Protein
Name | NONHSAT145163_smProtein_515:619 |
Length | 35 |
Molecular weight | 3722.2698 |
Aromaticity | 0.0882352941176 |
Instability index | 78.2911764706 |
Isoelectric point | 4.94451904297 |
Runs | 7 |
Runs residual | 0.0197319434103 |
Runs probability | 0.0321624145154 |
Amino acid sequence | MQSPEPSSFQCKVECVGEAASSEMAPPCFQKFLK |
Secondary structure | LLLLLLLLLLEEEEEELHHHLLLLLLHHHHHHLL |
PRMN | - |
PiMo | - |