NONHSAT145194
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145194 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1664 nt |
Genomic location |
chr17+:5137691..5144802 |
Exon number |
3 |
Exons |
5137691..5138497,5143202..5143599,5144344..5144802 |
Genome context |
|
Sequence |
000001 GTGAGAGtaa ctcgttacag ttgagacctc tcactcccgg tcattatctc atttcaatcc aagaggtaga cttcttcatc 000080
000081 gcccctgaca tacacatgag gaaaaggccc agagaggtga agtgatgcct caggtcactc agccagttac cagtagagca 000160 000161 gatccttcaa tgcaagtttt tctccaaccc tacacagcag tcgtaccagg gccccaggct gcaatcccct gGCCCAGTGC 000240 000241 TGATCGGTGG CTCCCAGGGA CACGCCCTGA TGCCAGCGCT GGCAGATGTC TGCTGTGAAG AGAGCAGGAA ACTGTCCCTT 000320 000321 GGAAAGCTGA GATGCTTACC TGAACTGTGA AAGTATCCAT ATGTGAGCAG CTAAGGAGAC AGCAGTGGCT GGAGTGCTGC 000400 000401 AGCTCAGGCA CAGCTGGTGA GAGGCATTCC TCACTCACAG GCCTTCACCC ACTGCTAGAG ACAGTGAGCC CCATCCTGAC 000480 000481 CACTTCCCCT TTCTAGTCAG CCCACGGGGC AGAGACCCTG GCGTCATCTC TAGGCAACCA TCCCTTTTCC AGGGAAGCTC 000560 000561 ATGACCCACG GCTGTCCAGA AGCCAGAATC TTCTCACTGC CCCGTGTCGC TCCCGCAAGG CCTACCAGAG GACCCTCATG 000640 000641 GTGTGGTAGG GGGTCCTGGC AGGGGCCAGG GGCCAGGGTG GAGACTTGGC AGTGGGGGTG GGTTTGGTGT CCCCACAGAC 000720 000721 GAGTTTGCCG TGAGCATTCC TGGATGTGGC AACCTCAGTC TCAAGAAGAG CGACAGGACG CCAGCTCCCA TGCAGAGACA 000800 000801 GATCCAGgcc tcctggagtc acaaagcctg gagcaacagg agaaccacta aagaagacgg aacagctagt tcctgcctta 000880 000881 atgattaacc gaccttgcaa cagtccacct tgtgatatgt tcctgccctt ccccaactaa tccatccacc ttgtgatatg 000960 000961 ttcctGCCCT TCCCCAACTA ATCCAtccac cttgtgatat gttcctgccc ttccccaact aatccatcca ccattgtgac 001040 001041 atgttcctGC CCTTCCCCAA CTAATCCAtc caccattgtg acatgttcct gcccttcccc aactaatcca tccaccttgt 001120 001121 gatatgttcc tgcccttccc caactaatcc atccaccttg tgattgttcc tgcccttCCC CAACTAATCC Atccaccact 001200 001201 gtgatatgtt cctgccctac cctaactaat ccatccacca ctgtgacatg ttcctgccct accctaacta atccatccac 001280 001281 cttgtgatat gttccttccc taccctaact aatccatcca ccttgtgata tgttcctGCC CTTCCCCAAC TAATCCAtcc 001360 001361 accactgtga catgttcctg ccctacccta actaatccat ccaccttgtg atatgttcct tccctaccct aattaatcca 001440 001441 tccaccttgt gatatgttcc tgcccttccc caactaatcc atccaccttg tgatatcgtg ccttatgact tcccccacct 001520 001521 tgtgactatg caccttgtaa cattcttccc ctgcccaaaa aaactgcccc taactgtaac tttccactac ctaccccaaa 001600 001601 cctatagaac cagttccact cccaccaccc ttcgctgact cctttctctg actcagccca cttg |
Predicted Small Protein
Name | NONHSAT145194_smProtein_560:850 |
Length | 97 |
Molecular weight | 11144.1895 |
Aromaticity | 0.09375 |
Instability index | 62.959375 |
Isoelectric point | 6.49798583984 |
Runs | 13 |
Runs residual | 0.00118127147766 |
Runs probability | 0.0463631051867 |
Amino acid sequence | MTHGCPEARIFSLPRVAPARPTRGPSWCGRGSWQGPGARVETWQWGWVWCPHRRVCREHS WMWQPQSQEERQDASSHAETDPGLLESQSLEQQENH |
Secondary structure | LLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEELLLLLEELLLL LEELLLLHHHHLLLLLLLLLLLLLLLLLLHHHHLLL |
PRMN | - |
PiMo | - |