NONHSAT145316
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145316 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1833 nt |
Genomic location |
chr17+:6915965..6918199 |
Exon number |
2 |
Exons |
6915965..6917061,6917464..6918199 |
Genome context |
|
Sequence |
000001 GCCCGCTTGC ACCTCGGCGA TCCCCGACTC CCTTCTTTAT GGCGTCGCTC CTGTGCTGTG GGCCGAAGCT GGCCGCCTGC 000080
000081 GGCATCGTCC TCAGCGCCTG GGGAGTGATC ATGTTGGTGA GGGGACTCCC CGGCAAGGAT CGGAGAGGGC CTGAGGGGCT 000160 000161 CCGGGCTGGG AGGGCTGGGA GGCGAGGAAA CTCTGGGCCG CAGGCAGGCC GGAGGGGCCG GGGATCTACA GGCCCCGGAG 000240 000241 AAGGAGACAG ACTGAAATTG AAAAATGGGA ACTgttcgag accagcctga ccaacatggt gaaaccccgt ctccaataaa 000320 000321 aatacaaaaa ttagccgggc gtggtggcgc ccgcctgtaa tcccagctac tcaggaggct gaggcaggag aatcgcttga 000400 000401 atccgggagg cggagggtgc agtgagccga gatcgcgcca ctgcactcca gcctgggtga cagagcgaga ctccgtcccc 000480 000481 aaagaaaaag aaaaaaGGGA ACTGGAGCGG AGGGCCCTGG AGTGGGAGGA GCCAGGGCTG GTAAAGGTGG AGACCCCTCA 000560 000561 AGGTAGGAGA AACAAGAGCG GGGTGCCTGA GAGGTGCTTG AGTTGAATGG AGGACATGGG AGGAAAAGAG AGTGCTTGTT 000640 000641 CCAGAAATGT GTAGCTGGGC CTTGTTTTCC CAGTAATCCA CCCACCGCCA CTTCAAGAAG AAATGATATG AAGAAGTGCC 000720 000721 GGTTCTCCCT CCCCTCTTCC GCACTGTCCC GTGATGATGA CGCCTCCAGA GAGGACGATA ATCTGGGTTC CTGGGAGAGA 000800 000801 TGGCTTGGTC ACTATTCCCA CCCTTGCCTC GACCACTTGT CTCAATGTCA CCACCTCACG CCCTGTTCCA GGTGGCTGAG 000880 000881 TCCGAATCCA GTAACCACCA CCTCGTTTTG GTTAATCTCA GGCTCGGGTG TTGTAGCAAC ATTGGAAATG GGAGGGGTTT 000960 000961 ACGAAGTGAA CATGAGGTCA GGTGCCTGAA TTCAACAGTC TACCCATTCC CCTTTTCCAG ATAATGCTCG GAATATTTTT 001040 001041 CAATGTCCAT TCCGCTGTGT TGATTGAGGA CGTTCCCTTC ACGGAGAAAG ATTTTGAGAA TGGCCCCCAG AACATATACA 001120 001121 ACCTTTACGA GCAAGTCAGC TACAACTGTT TCATCGCTGC AGGCCTTTAC CTCCTCCTCG GAGGCTTCTC TTTCTGCCAA 001200 001201 GTTCGGCTCA ATAAGCGCAA GGAATACATG GTGCGCTAGG GCCCCGGCGC GTTTCCCCGC TCCAGCCCCT CCTCTATTTA 001280 001281 AAGACTCCCT GCACCGTGTC ACCCAGGTCG CGTCCCACCC TTGCCGGCGC CCTCTGCGGG ACTGGGTTTC CCGGGCGAGA 001360 001361 GACTGAATCC CTTCTCCCAT CTCTGGCATC CGGCCCCCGT GGAGAGGGCT GAGGCTGGGG GGCTGTTCCG TTTCTCCACC 001440 001441 CTTCGCTGTG TCCCGTATCT CAATAAAGAG AATCTGCTCT CTTCAGCCCT GTGTCTGTGC TTGAGTGGGG GCGAGCACGG 001520 001521 GGCTGAGACT AGAGGTCGGC CTCTGCCTGG AAAGTCCCGA TGTCTGAGCG GAAGTGGAGC GAAGTGTGGC GCGGAAGTGA 001600 001601 GGCGAAGGCT TTCCCCATCG ACTGGGCGCG CCGAGCGGTC TAAGCGACTG CGTCTGATGG GGCGGGGAGC CGCCGGGTTG 001680 001681 AGCCTATCCG CTGCGGGGAG GGCGGGACTT CCTGCGCGGG GGCCCGAGCC GCTCAGTCTC CCTGCTCTCC GTGGTCCCGG 001760 001761 CTCGCGTGTA GCGGCGGCGG CGGCGTCTCC GTGAGGAGGC GCGCGGGGCC ATGACGTCAG CGTCCACAAA GGT |
Predicted Small Protein
Name | NONHSAT145316_smProtein_707:988 |
Length | 94 |
Molecular weight | 10380.5182 |
Aromaticity | 0.0860215053763 |
Instability index | 58.5978494624 |
Isoelectric point | 6.15447998047 |
Runs | 13 |
Runs residual | 0.00886101154918 |
Runs probability | 0.0372318019377 |
Amino acid sequence | MKKCRFSLPSSALSRDDDASREDDNLGSWERWLGHYSHPCLDHLSQCHHLTPCSRWLSPN PVTTTSFWLISGSGVVATLEMGGVYEVNMRSGA |
Secondary structure | LLEEEELLLLLLLLLLLLHHHLLLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL LEEEEEEEEEELLLEEEEEEELLEEEEEELLLL |
PRMN | - |
PiMo | - |