NONHSAT145318
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145318 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1674 nt |
Genomic location |
chr17-:6918094..6920821 |
Exon number |
2 |
Exons |
6918094..6919333,6920388..6920821 |
Genome context |
|
Sequence |
000001 TGTTTTCTGT ATAAAAATGT CCATCAGATG AAGGTCAAAG GGGTTGGGGG CAGATGCTTA TGCGGGAATA GCGAGGTGGC 000080
000081 AGCCCCAGCA GCCTTTCAGC CCTCTCTCGT GCAGGCCTTG CTCGGAGTCC CAGGAGATCC ACAGGTCCGG CATGAACAGT 000160 000161 GAGAGGTCAG AGGTGGAAGG CTCAGCAGGA GAGGAGAGGA GGATCAGCAG AGGTCATGAG AAGGCCAGAA TCCAGGGTCA 000240 000241 GGCTGTCTGG AACAGGAAGT AAAATGGGCC GAGATGGAGC GAGCCCCCAG TGTGCTTCCA AGGCCACTCC CACCTCCCTG 000320 000321 AAACACCCTG CTACGTACTG ATCCAATGCC CTGCGCTGTG TATGAGAGCA CCTTCTCTTC TGAAACCCCT ATACAAGGGA 000400 000401 GGGGCCCCTG CGGAGACCGT GCCCTGCCAT CCAGTCCTCA AGGGGATTCT AAAAAACTAG TGACAAAGTA GGGAAGCAGC 000480 000481 TGAGCTGGAA AGGAGTTCTG AGGACGATGG AACCTTGGGT AAGGAGGAAG AAGGCTGCCC ACCCGCCCTT TTCTGGCAGC 000560 000561 CACCCTCCCT CACACTGTCC GTTCCTTGAT GACACAGCTG ATGTGATTAA GATCGTCCCC AAATCGCTTC ACAGCAGCCC 000640 000641 TCAGCATCTC TATTTCCGTC TCCGTCCACT TCGCACTGTC AGAAGGGGAG AGGGGGGATA GCAAAAATGG GAGGGGGGGT 000720 000721 GTGGAGCCCG CCCACAGGCT ATGCATCCCA CAGCCAACCA GCCGCCTCCT TCCGATTTCT GGGACCCCTT CCACGGATGC 000800 000801 ATAAAGAGGT CCTCCGTAAG GGGAGGCGGA AAGCTCTTGA GGCCCTGCGG GAACCGGGAG GACCCCAATC ACAAGAAATC 000880 000881 ACAACCACCT CCACCTTAGA CACCCCTTTC CACCATCAAC GTTAAACGGC TGCTGTACAC AGCACACTGA AACCAACTCG 000960 000961 CCAGGAAGGG CTTTTCAAAA CAGACCCACC AACACAGCCT GCAGCCGTCT GGGGGAATTC CATGAACTGG GGTGGTTGGG 001040 001041 AGTGGCGGTG GTTTGTGGTC GACCCGTTCG CAGCAGGGAG AACTGTGAAA CAGGAGTCTG GGCTATGGGC CTGTCTGTAT 001120 001121 TTTTATCTGT CATTCattcc ctcacccaac gatcatttat taacaccgac tctgtgctgt gccacgcaca aagggaaact 001200 001201 aatgtctgtc cctgtgctag agagggtcCG TGTCTGTGAC CGAGTCCAAG CGCCCGCTCT CAGCGTCCAC GTCCCAGTCC 001280 001281 GGGCTCACGT ACCCCGCAGG AGAAGAGTCG GCCACGGGAT GCAGCTGCAT CGTCAGCTCC CCGAGCTTCG TGAAGGCGGC 001360 001361 GCCGGCCGCC GAGAAGATCT CTCCGACCTG GGGGCGGGGC AGCGTCAcgg ggggccggcg cccgccctcc ccgtcccgcc 001440 001441 cggagcccct agccccaccc caggctcggc tcccgcccgc cccccgcccg gggcggAAGA GCCGCGAGCC AAGTGGGGGG 001520 001521 CCCGCCCTCC CGTGGCCGCC AGGGAGCGCT GTCCGCGAGG GAGGTCGAAC CTTTGTGGAC GCTGACGTCA TGGCCCCGCG 001600 001601 CGCCTCCTCA CGGAGACGCC GCCGCCGCCG CTACACGCGA GCCGGGACCA CGGAGAGCAG GGAGACTGAG CGGC |
Predicted Small Protein
Name | NONHSAT145318_smProtein_506:700 |
Length | 65 |
Molecular weight | 7295.3382 |
Aromaticity | 0.078125 |
Instability index | 61.496875 |
Isoelectric point | 10.5067749023 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0482423600071 |
Amino acid sequence | MEPWVRRKKAAHPPFSGSHPPSHCPFLDDTADVIKIVPKSLHSSPQHLYFRLRPLRTVRR GEGG |
Secondary structure | LLLHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHEELLLLLLLLLEEEEEEEELLEEEL LLLL |
PRMN | - |
PiMo | - |