NONHSAT145657
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145657 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3440 nt |
Genomic location |
chr17+:10757130..10760569 |
Exon number |
1 |
Exons |
10757130..10760569 |
Genome context |
|
Sequence |
000001 gttgagtgtc tccaaatatg aagataattc gtgaccttga aagttctaaa atgaccttga gtctacttgc ttcttgaaat 000080
000081 ctaggtaagg ttattctttg aacttcctat ggaagttcaa agccctccct gtgatttctg caatttctaT GTTTCTGcct 000160 000161 gggcatggct tataatcacg tggagaggat gttaagacaa aaatggctgg gctaggccct catcaattct gattcagcag 000240 000241 gtctgtgggg aggcccagaa tttgcatttc tcacaagctc ttagatgatg ctgatgccac tggctcttag accacacttG 000320 000321 TGTAACAAGT GCTGCCCTGG AGCCgtggtt ctcaaggtgt cttggtccat ttgtgttgct acgaaggaat atctgaggct 000400 000401 aagtaattca taaaagaggc ttatttggct catggtgttg cagactgtac aaaaatcatg gtgccagcat ctgcatctgc 000480 000481 ggagggcctc aggctgcttc cacttatggt gaaagggaaa ggggagtcag cacatgcaga gatcatatgg tgagaaagga 000560 000561 agcaagacag agaggaggga ggtgccaggt tctttttagc aatcagttct acagagtgaa aactactcat tttcaccaag 000640 000641 agcgcaccaa gccattcatg agaaatccat ccctatgacc caaacacttc ccattagtcc ccatctccaa tattgggttc 000720 000721 aaatttcaac atgaggtttg gagggttcaa tatccaagct atatatacct taaaacttag cgtcggaatc acctagagag 000800 000801 cttaataaaa cacagactgc tggctgccat cccagagttt ctgattcaag aggtctgggg tggggccccc agattttcat 000880 000881 ttctaacaag ttcccaggtg atgctgatgc tgctggtccc agcatcaaac tttgagTAAT GGTTCTTCAG AGGACCCTCC 000960 000961 TTTGATCCTC CTTCAGCTGT GCCCTTCCCT ACAGGGGAGT CTTGGGacca agggaccatc ctcttcccca ctagacccta 001040 001041 ctctgggtac ttgagatcct tgtacaacta gccttgagcc cacttccagg gcctgcatgg gGACTATTCA TAGGAGGtgg 001120 001121 gaggggagtg gatggagttg gatgtacagg ctgggatgtc cacatgccat gtgaggtcct tgtagttcag gatggagccg 001200 001201 aggttgagaa gaatggggga TGGAACCAGA GCCCAAACAT TCCTGTGCAG GTAGCATCAT TTCCTCCATT TAGGACCATC 001280 001281 CTGACCAGAG ATGAGAAACA TGACAATTag gaacataggt tctcaagtca cgcatacttc cattcaatcc atgactctga 001360 001361 actctttccc ccgtgacctc aggtaagtta ttaaacctct atgaacctag tctctgcatc tgtaaaattg gaataatgcc 001440 001441 aaatacctac ctcattggtc ttttggcaag agctactgca gtaaggtata taaggcattt agcatgagcc ttggaatgta 001520 001521 gtaaatggtt gaaactattg ctctTGCTGT TGTTATTATT AGTTGCTGCT TTATTAAGTC CTGTGGTGGG CGGAGCACCT 001600 001601 GTTATTCATC ACTGTCTTCT TGCCTTGTGC CAGAGAAATC CAGGCACCTT CTGAGCAGGA TTTAGGCTCC TGGTGCTCTC 001680 001681 CTCTGGCTGC TCTTTGCTCC ATCCTGCTCA CAGCCCAAAG TCCTATATTG AAGACCATGA ATAAAGGATG CTAGAGTTTA 001760 001761 GAAGATAACA TGCCTTTTTT GTAAATGGCT AATCTGAATG AGCAACTTCA TAGAAAATAG TACTTTCTTG CTGCTGTAAT 001840 001841 TAGAAGTTTC ATGAATCTAT TTGTGGTCGA GATAGTAACA TTTATGAAAA ATAGTGCATT CAATTATTTG ACCCTTGCTC 001920 001921 CCATTTTTCA AAGGTTTAAT TTATGTTTTC TTTGCTTTGT GACTGCTTTA GATACAGTGA TGAAATATGA GTGTCTTTGT 002000 002001 GAGTGCTTAG GCAGCCCCCA TGGATGTTGG AGTGTGGGCC TGTGTGAATG AGTGCCTCTC CTCATGTATA TATGAGAATT 002080 002081 CCAACCTCCA GCAGCAGCAA TGATAACCTA ACTTGTACTT TCACCAGGCT TTCAAcaggg ccatccagtc ctactttcta 002160 002161 caatgatgag agtatccttt ctttgtgttg tcgaaaatgc agccactagc cacatgtggc tatgagcact tggaaggtga 002240 002241 ccaaagggac cttaggtgaa aattgaattc tgaattttgt ttacttttca ttaacttaaa tttaaatagt cacttagcat 002320 002321 tagtagctac catgtcgggc aatgcggATT AAGAAGGTAC TTGCTGACTT GATCTTTGCT ACTTCTCTGA GAGAGGAATG 002400 002401 GAGAAATGTA TCATCTTATT GACAATGAAA CTTTGGAGTG GAAAGGCGGT GTGACTGATT TAAGATCACA GTGCAGTGAT 002480 002481 CACACGTGGG TATGAGGCAG GCGGTCATCC ACCCCATCAC CACAGGTAAC CTGCTTCTTC AGAGCCTGAG AAAGTCTAAT 002560 002561 ACCTGAACTA CTAAGAAAAA GACAAACACT TCAATAGAAA AAAATGGAGA GGATaaaaaa gtaacattca aaaattcaaa 002640 002641 agcattctta catactagga gtaatcaatt agaaaatata ggctttcgat atgaagaaaa gttgtgaaac tgtccagaag 002720 002721 gccacaaagg aagatgtgaa taaacagaga caaattgtgt tcctggtggg aagccccagt aggtcagttc tacacaaagt 002800 002801 aatttataaa tacaaagcaa ttcccttaag aaccttaggg atatttcatg gagtttttca aactgaagaa aaaaatgcac 002880 002881 ctggagtaga aaatgtaaga gaatagcata gacatttaaa aatataaatc agaggcttgg aggggcaggg aaacacatga 002960 002961 caaagtaata ataactaaaa caatatgggg atggtgtgta aatagcctga aggacaaatg caacagggca gagagtccag 003040 003041 aacgaaccca tgtatgtgtg gaaactagga tgtgatagca gcaatgcctc aggccagtag gaaaagaTGG CAGTTCTGTC 003120 003121 CTgcactgtg atttatagtg aaaaattcaa aacaaatgtc ccacaataga aaattaataa aatatctttt aagactatgc 003200 003201 attcatgaga tgacaaaata aaccatttta aaactatgat attactaaat gacaaaatga taaacattat ttatggagat 003280 003281 gtatatgata tactgttcag tgagcacaaa aacacacttt acaaaatagt aaaaagggct gggcgtagtg gctcatgcct 003360 003361 gtaatcccag cacgttggga tgccaagcag gggcggatca cctgaggtca ggagttcgag gccagccctg ccaacatggc 003440 |
Predicted Small Protein
Name | NONHSAT145657_smProtein_2690:2905 |
Length | 72 |
Molecular weight | 8100.3392 |
Aromaticity | 0.0704225352113 |
Instability index | 53.7591549296 |
Isoelectric point | 9.77752685547 |
Runs | 11 |
Runs residual | 0.00637509266123 |
Runs probability | 0.0432705432705 |
Amino acid sequence | MKKSCETVQKATKEDVNKQRQIVFLVGSPSRSVLHKVIYKYKAIPLRTLGIFHGVFQTEE KNAPGVENVRE |
Secondary structure | LLLLHHHHHHHHHHHHHLLLEEEEEELLLLLLEEEEEEEEEEEEELEEELEEEEEEELLL LLLLLLLLLLL |
PRMN | - |
PiMo | - |