NONHSAT145657

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT145657

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3440 nt

Genomic location

chr17+:10757130..10760569

Exon number

1

Exons

10757130..10760569

Genome context

Sequence
000001 gttgagtgtc tccaaatatg aagataattc gtgaccttga aagttctaaa atgaccttga gtctacttgc ttcttgaaat 000080
000081 ctaggtaagg ttattctttg aacttcctat ggaagttcaa agccctccct gtgatttctg caatttctaT GTTTCTGcct 000160
000161 gggcatggct tataatcacg tggagaggat gttaagacaa aaatggctgg gctaggccct catcaattct gattcagcag 000240
000241 gtctgtgggg aggcccagaa tttgcatttc tcacaagctc ttagatgatg ctgatgccac tggctcttag accacacttG 000320
000321 TGTAACAAGT GCTGCCCTGG AGCCgtggtt ctcaaggtgt cttggtccat ttgtgttgct acgaaggaat atctgaggct 000400
000401 aagtaattca taaaagaggc ttatttggct catggtgttg cagactgtac aaaaatcatg gtgccagcat ctgcatctgc 000480
000481 ggagggcctc aggctgcttc cacttatggt gaaagggaaa ggggagtcag cacatgcaga gatcatatgg tgagaaagga 000560
000561 agcaagacag agaggaggga ggtgccaggt tctttttagc aatcagttct acagagtgaa aactactcat tttcaccaag 000640
000641 agcgcaccaa gccattcatg agaaatccat ccctatgacc caaacacttc ccattagtcc ccatctccaa tattgggttc 000720
000721 aaatttcaac atgaggtttg gagggttcaa tatccaagct atatatacct taaaacttag cgtcggaatc acctagagag 000800
000801 cttaataaaa cacagactgc tggctgccat cccagagttt ctgattcaag aggtctgggg tggggccccc agattttcat 000880
000881 ttctaacaag ttcccaggtg atgctgatgc tgctggtccc agcatcaaac tttgagTAAT GGTTCTTCAG AGGACCCTCC 000960
000961 TTTGATCCTC CTTCAGCTGT GCCCTTCCCT ACAGGGGAGT CTTGGGacca agggaccatc ctcttcccca ctagacccta 001040
001041 ctctgggtac ttgagatcct tgtacaacta gccttgagcc cacttccagg gcctgcatgg gGACTATTCA TAGGAGGtgg 001120
001121 gaggggagtg gatggagttg gatgtacagg ctgggatgtc cacatgccat gtgaggtcct tgtagttcag gatggagccg 001200
001201 aggttgagaa gaatggggga TGGAACCAGA GCCCAAACAT TCCTGTGCAG GTAGCATCAT TTCCTCCATT TAGGACCATC 001280
001281 CTGACCAGAG ATGAGAAACA TGACAATTag gaacataggt tctcaagtca cgcatacttc cattcaatcc atgactctga 001360
001361 actctttccc ccgtgacctc aggtaagtta ttaaacctct atgaacctag tctctgcatc tgtaaaattg gaataatgcc 001440
001441 aaatacctac ctcattggtc ttttggcaag agctactgca gtaaggtata taaggcattt agcatgagcc ttggaatgta 001520
001521 gtaaatggtt gaaactattg ctctTGCTGT TGTTATTATT AGTTGCTGCT TTATTAAGTC CTGTGGTGGG CGGAGCACCT 001600
001601 GTTATTCATC ACTGTCTTCT TGCCTTGTGC CAGAGAAATC CAGGCACCTT CTGAGCAGGA TTTAGGCTCC TGGTGCTCTC 001680
001681 CTCTGGCTGC TCTTTGCTCC ATCCTGCTCA CAGCCCAAAG TCCTATATTG AAGACCATGA ATAAAGGATG CTAGAGTTTA 001760
001761 GAAGATAACA TGCCTTTTTT GTAAATGGCT AATCTGAATG AGCAACTTCA TAGAAAATAG TACTTTCTTG CTGCTGTAAT 001840
001841 TAGAAGTTTC ATGAATCTAT TTGTGGTCGA GATAGTAACA TTTATGAAAA ATAGTGCATT CAATTATTTG ACCCTTGCTC 001920
001921 CCATTTTTCA AAGGTTTAAT TTATGTTTTC TTTGCTTTGT GACTGCTTTA GATACAGTGA TGAAATATGA GTGTCTTTGT 002000
002001 GAGTGCTTAG GCAGCCCCCA TGGATGTTGG AGTGTGGGCC TGTGTGAATG AGTGCCTCTC CTCATGTATA TATGAGAATT 002080
002081 CCAACCTCCA GCAGCAGCAA TGATAACCTA ACTTGTACTT TCACCAGGCT TTCAAcaggg ccatccagtc ctactttcta 002160
002161 caatgatgag agtatccttt ctttgtgttg tcgaaaatgc agccactagc cacatgtggc tatgagcact tggaaggtga 002240
002241 ccaaagggac cttaggtgaa aattgaattc tgaattttgt ttacttttca ttaacttaaa tttaaatagt cacttagcat 002320
002321 tagtagctac catgtcgggc aatgcggATT AAGAAGGTAC TTGCTGACTT GATCTTTGCT ACTTCTCTGA GAGAGGAATG 002400
002401 GAGAAATGTA TCATCTTATT GACAATGAAA CTTTGGAGTG GAAAGGCGGT GTGACTGATT TAAGATCACA GTGCAGTGAT 002480
002481 CACACGTGGG TATGAGGCAG GCGGTCATCC ACCCCATCAC CACAGGTAAC CTGCTTCTTC AGAGCCTGAG AAAGTCTAAT 002560
002561 ACCTGAACTA CTAAGAAAAA GACAAACACT TCAATAGAAA AAAATGGAGA GGATaaaaaa gtaacattca aaaattcaaa 002640
002641 agcattctta catactagga gtaatcaatt agaaaatata ggctttcgat atgaagaaaa gttgtgaaac tgtccagaag 002720
002721 gccacaaagg aagatgtgaa taaacagaga caaattgtgt tcctggtggg aagccccagt aggtcagttc tacacaaagt 002800
002801 aatttataaa tacaaagcaa ttcccttaag aaccttaggg atatttcatg gagtttttca aactgaagaa aaaaatgcac 002880
002881 ctggagtaga aaatgtaaga gaatagcata gacatttaaa aatataaatc agaggcttgg aggggcaggg aaacacatga 002960
002961 caaagtaata ataactaaaa caatatgggg atggtgtgta aatagcctga aggacaaatg caacagggca gagagtccag 003040
003041 aacgaaccca tgtatgtgtg gaaactagga tgtgatagca gcaatgcctc aggccagtag gaaaagaTGG CAGTTCTGTC 003120
003121 CTgcactgtg atttatagtg aaaaattcaa aacaaatgtc ccacaataga aaattaataa aatatctttt aagactatgc 003200
003201 attcatgaga tgacaaaata aaccatttta aaactatgat attactaaat gacaaaatga taaacattat ttatggagat 003280
003281 gtatatgata tactgttcag tgagcacaaa aacacacttt acaaaatagt aaaaagggct gggcgtagtg gctcatgcct 003360
003361 gtaatcccag cacgttggga tgccaagcag gggcggatca cctgaggtca ggagttcgag gccagccctg ccaacatggc 003440
[back to top]

Predicted Small Protein

Name NONHSAT145657_smProtein_2690:2905
Length 72
Molecular weight 8100.3392
Aromaticity 0.0704225352113
Instability index 53.7591549296
Isoelectric point 9.77752685547
Runs 11
Runs residual 0.00637509266123
Runs probability 0.0432705432705
Amino acid sequence MKKSCETVQKATKEDVNKQRQIVFLVGSPSRSVLHKVIYKYKAIPLRTLGIFHGVFQTEE
KNAPGVENVRE
Secondary structure LLLLHHHHHHHHHHHHHLLLEEEEEELLLLLLEEEEEEEEEEEEELEEELEEEEEEELLL
LLLLLLLLLLL
PRMN -
PiMo -