NONHSAT145695
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145695 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2766 nt |
Genomic location |
chr17+:12394011..12481229 |
Exon number |
4 |
Exons |
12394011..12394119,12428602..12428763,12434483..12434790,12479043..12481229 |
Genome context |
|
Sequence |
000001 ATCTCTTTCC CATGATCAGA TATCAGAGGA ACACTGAATT CTACAATTTC TTTGGACCAT CAGCATTAGC ATCTGTTGGA 000080
000081 AGTGAAAACA ATTAGAATCT GCATTTAAAT AAAATAATAA TTGTATTGAG ATATTCACTT ACTATAGAGT TCACCCACTT 000160 000161 AAAGGGTAGA ATTCAGTGGT TGTTAGTATA TTCAATAGTG TATTCACAGA TATGTGGAGC AATCACCATA GTCCAACTTA 000240 000241 AAAAGAAATG TCAGGCTGTT TAGCTATAAC CAAATTCTCT CATTTTTGTC TTGTTTGAAT ACATAAATGT ATACTATATT 000320 000321 ATTAAAAATT AGTTTTCAAT TTGTAGAGAA TTCTAGAAAG GCAGTATTTT TTTTTATTGT GAGATAACTT AATTAACTTG 000400 000401 TAGCTTCCAT TGTTTAGGTT GACAAATCTA CTGTCTGTCT AAATGTTTCT TCTTTAAAGA TAATCTTCAA CTCCTTTTAA 000480 000481 GATTTTCTCC TTGTATATTT TTAATAGTTT GACTATGATG TGTCTGTAAA TGAATTTAAT TTTGATACTT AGAGGCAGTA 000560 000561 CAAACAGGGC TTCTTGAATT TCATTTCTCC TTGTATTTTT AATTGGTGTT CTTTGTGTAC TTTGAGGTAA TGTTGTTTAG 000640 000641 TTATGTGTAT GAGTTATATC TGCATAGTGA AGTGTGCCTT TTGAAATATG ACTCCCTTTT TTAAAGTAAC ATTTTGTGTC 000720 000721 TTGCATTTTG ATCCAGTATA AATATTTGCA CCCATCTTTC TTTGAGTGTT TATGAGTAAG GCTTTAACTA TCAATGTTAC 000800 000801 TTTTAACTTT CCTGAGTCAT TTTGATTAAG ATGTGTTTTC TTTAAAGAAA AATAATATTA ATATGTGCTT CTAATAGTTG 000880 000881 TTTCAAAGAT TAAATATAAT AATACAATTA AAACAAATAG TGTAGTATTT GACATATAGA AAATGCTCAA TGAATACCAA 000960 000961 CTAATAATTG CGTGAAAAGC ATGCATTCAA TTTTTTTTTT TTTTTTGAGA TGGAGTCTTG TTCTGTGACC CAAGCTGGAG 001040 001041 TACAGTGGAG CAATCTCAGC TCACTGCAAC CTCCACCTCC CGGGTTCAAG TGATTCTCCT GCCTCAGCCT CCCGAGTAGC 001120 001121 TGGGATTACA GGTGCCCACC ACCATGCCTG TCTAATTTTT TGTATTTTTA GTAGAGATGG GGTTTCACCA TGTTGGCCAG 001200 001201 GCTAGACTCG AACTCCTGAC CTCAGGTGAT CTGCCCACCT CGGCCTCCCA AAGTGCTGGG ATTACAGGCA TGGCATTGAA 001280 001281 TTTTTAAAGC AAAATTGAAA TTTAAGAATT ATAATTCAAG ACTATAGTCT TTATTGTTAC ATATTTTATT TTAGGCATTC 001360 001361 TTCTTGACAT CTGCTCTCAT CCTTTCTAGT TTTCATTTGC TTTTCCTGGT TCTTTCTTGT TAAGTCTACT TTACTTCCTC 001440 001441 AGGCCCTGTG CTAAATGTGA TGGATGCTGC AGTGAGCAAA CCTCAGGGCT TACATTGTAG AAGGAAAGGC AGACTCAAGT 001520 001521 CAAATCATCA CTCAAACAAT CATGTGAAAT TACAACCATG ATACATGCTT TGGGATACAT GAGAGTAGAC TTGCAACTGT 001600 001601 CACCTTAGAT TCATATAACA TTTACAAAGC ACTTTTCATA CATTATGTCC TGTGAGATAA ATTACAGCCA TAGAAGATGT 001680 001681 ATCCCTTGAC CCTACATGAT TAAAGGGTAG ATGGTTAATT CTTTCAAAAC ACACATTTCT TGTACCAAAT GTCATGTACC 001760 001761 ACTCACTCTC AGAATCTGTC ATTCTGAGAA TACAGAGAAA TTTTGCCCAC TAATGGGATT CAACATTTTC ATGGGAGAAA 001840 001841 GGCAATAGAA CATTCCATTT CTTAGGTAAA ACAACCAAGA ATGCGGGCTG CAACTCTACC ACTTTGGGGG TGGGGGGTGG 001920 001921 AACTACCGAG CGATTAGATG TTCAATAAAT ATGTATTACC TGTCTTCTAT TGACTAAGAA CTGTGCTAAG CTGTGTAGAT 002000 002001 ACAATGAAAA TAAGACATAG TTCCTGTCTC ATGGACCAAG CTACCTATAT GAGAAGTTCC ATAGTGAGGA CCATGGAACA 002080 002081 CAGAAGACTC AGAAATTGGA CAGTAGTTGG GGACAATTGT AGCCCTCTCC ATATATTGAA ATACAGAAAA GCTATATCTT 002160 002161 TTCCGCAGTC AGAACTGTGT AAAGATGGAA TGAGTTTTCT GATGAGAAAA TATGTTTTTC TCCCACCGGT GTGTGGACTT 002240 002241 TCAACTTCTT TATCTCCTAT TATGTCAATG CTAGATGTCC CATATGCGTG ACTTTTTAAA GTGTTTATTA TAGGAATTTT 002320 002321 CAAATATTCA GAGGGGTGCT AAAAATAATA TCATAATTAT CCATGTACCC AATCTCCAAC ATCATTAAGC GATAACATTT 002400 002401 ATCCAAATCT GCTTTAGATC TCTAATTAAG AAGCAAAATT TTAAAGATGA AGTTGAAACC TCATTTGTCA CCCTACTGAT 002480 002481 CCCATTCTTC TTCCTGCCTC AGAGTTTGTG TGGCCCTAAA GTTGATGTCA CTCTTTTTCA TCCATGTTCT TGTATATTTA 002560 002561 CTGCATCAAT ACATCTGAAT TTTTTTTTTC CAGAAACTTT AACCCCAAAC CACCTTCTTG CTCAAAACCC TTCAGTGGCT 002640 002641 CCCAACTGTC TACACCAATG ATCCGCAAAT CAAGTTATCT TCTGAATCTT CTCGGGAGTT TCAAAATTAT ATAGATTCTT 002720 002721 GGGTTGTCCT TGGGGACTTT GCAAATTTTC AGGGTTTCTC AACTTT |
Predicted Small Protein
Name | NONHSAT145695_smProtein_2003:2290 |
Length | 96 |
Molecular weight | 10973.9572 |
Aromaticity | 0.0842105263158 |
Instability index | 75.7926315789 |
Isoelectric point | 9.63641357422 |
Runs | 16 |
Runs residual | 0.0393700787402 |
Runs probability | 0.0484013425191 |
Amino acid sequence | MKIRHSSCLMDQATYMRSSIVRTMEHRRLRNWTVVGDNCSPLHILKYRKAISFPQSELCK DGMSFLMRKYVFLPPVCGLSTSLSPIMSMLDVPYA |
Secondary structure | LLEELLLLHHHHHHHHHHHHHHHHHHHHHLLLEEELLLLLHHHHHHHLLLLLLLLHHHHH LLHHHHHHHHEELLLLLLLLLLLLHHHHHLLLLLL |
PRMN | - |
PiMo | - |