NONHSAT145701
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145701 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3687 nt |
Genomic location |
chr17-:12663451..12693559 |
Exon number |
3 |
Exons |
12663451..12664907,12664918..12667035,12693460..12693559 |
Genome context |
|
Sequence |
000001 GAGAGCAAAC ACCTGTTTCC AGGAAGACAG GCGGCCAGAG GGAGAAGGGA GTCCCGGGGA AAGGCAGGGA GGACGAAGCG 000080
000081 AAGGGGCAGC CGGGGACGCA GTAAAGTATG TATGGCTGTG TGCTTTCCCC CATGGAACTC CATTGGTCTT CCATAGCACT 000160 000161 GGTGCATTGG GCATTCTACC ACTGCTGCAA GTGAAGGTCC ATGGAAGAAT TCAAATTGAG ATCAGTGACA TCCAGGAAAT 000240 000241 CGATGTTGAA GATGCTGGGG CTGCTGGTGG TGAGGGCGCT GAAGCCTGGT GTGGAATTTG GCGGAGTGAG GTCCAGCCAC 000320 000321 TCCATGGTTT CCCAGGGAGA TTCAGTGAAG CTTAACTGCA GCCCATTGCT GTCCACAGAA GAGGGTGAAA ACTGTGTCTG 000400 000401 CATTGGAGAG AGGGGGCCTG GCAAGATCTC ATGTGCATTG AAGAGGTCTT CTGCAGCCTT CCCAGAGAAT CCATCCATTA 000480 000481 TCCCATCAAA GTGAGGCTCT TCGCTCCCAA TTTTTAGAAG GGTGACAACA CTCATCTTTC CTAGGGGGCT CTGGGAATTT 000560 000561 AATAAGACTT CAAGATGCTC ATCACTGTCG GTGGCATAGG GATCAAAGGG GATCTGGCTG CCTGAAGAGG CTTGTTCAAA 000640 000641 GGAAGCCGAG GGCTTGGTGA GGACAGCAGT TGGACTTCGG GAAGATCTGG GTATCTTTGG GACTTTTTGA AGACATGAGT 000720 000721 GATCCTCTCT AGCGTCTGCT GGCATTTCTG TGGGCAATAC ACGATGTGAC TTGTTAAATC ACTTCAAATT GAGCATGCCA 000800 000801 CACAATATGA GTGAGTTACA CTTAGATACA GAAGATGGCC ACGCTTCCCT GGTCACCGCT CACCACCCAG TCTCATCTCT 000880 000881 AAGCTGCTCT ATCAATCTCC AATTCATCTT CCCTCTGGTT TTTCCCAAAC CCTTTCCTCT TGGGAATTCC ACTCTGTGAT 000960 000961 TATTAAACTC TCTTCTCTGA AGGTTCCTGG CCTACTCCTC TGACCCCTGG TAGTCCCTTG AGGACACTGA GTCCATCCCA 001040 001041 ACACCATCAG TGAGGGCCTG AAGATGAGGG ACCAGGCGCC ATGCCATTGC CACTTTCTGA TTGCTACTCC CCCCGCTTCT 001120 001121 GATGACAACT CAGCAGTTTT GGGTTTTGAG GGTGACAGCA ATGCCTCACC CCTAGCCTCC TGGTCACTCC CCCTCATCTA 001200 001201 CTGAAAACTC TGCTTCCTAC TCCATTGCCT TTTCCCCACT TGAACCCTTC TCATTCTGTA ACCTGAGCAT CCTTGGAAAT 001280 001281 CACAGTGTTC ATGCTGGCCT CTGAGCTCCC GACTTCCTCC TCAACTCCAG TGATTCCCCC ACTGCCACTC TGTCAGACAC 001360 001361 ACCTTGGATT GTGTCATCTC CAAATACTGC ATCCCTCTGA AAGCTCACTT TCAAGCTATA TTTTCTATTC TCTGTCCATC 001440 001441 CTCTCCCAAC CCTCCAAGCC ACTTATTATG TACCTTGTAA CAATAATTTC CCAACCATTT ACAGTCACAC TAATCCATAG 001520 001521 ACTCTACTAT GTTATCACTG TCCACCAGCC CCTCTGGTCT TCACTTCTTT CCTTGTCTAG CCTGTATTTT TGGCAGAACC 001600 001601 CCACACCTGG AGGAACCTGA TCATCTGCCT TCGCTGAGCA TGCTCTGGAT CAGCAGAACA TTGCAAGAGA AAAACTAAAC 001680 001681 AACTAAGCTG ACTTGGTTTC ACTCTAGATT TCTGAGGTCA GACCTACAAC TGGCATTTAA GACTGCAAAA CAACCCAGCT 001760 001761 GTGTTTCTCC AGAAAACTCA GTTCATTCAT GATTAAGTCA TAACTGCTCT TCTTCCCCTG AATCTTCCAC ACTCCCCTTC 001840 001841 TGCATCCTCA CGTTTTTCTG GCCTTGCCAC ATATTTCATT AAAAATATAC AAGGGCAGGC TGGGCGTGGT GGCTCACGCC 001920 001921 TTTAATCCCA GCACTTTGGG AGGCCTAGGT GGGCAGATCA CGAGGTCAAG AGATTGAGAC CATCCTGGCC AACATGGTGA 002000 002001 AACCCCGTCT CTACTAAACA TACAAAAAAT TAGCTGGGCG TGGTGGCACG CGCCTGTAGT CCCAGCTACT TGGGAGGCTG 002080 002081 AGGCAGGAGA ATCGCTTGAT CCCAGGAGGC GGAGGTCGCA GTGACCCAAG ATCCCGCCAC TGCACTCCAG CCTGGCGACA 002160 002161 GAGTGAGACT CCGTCTCAAA AATGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA TGGGCATCTG ATATGAACTC 002240 002241 TTCTCATCTT TCCATTACAG AACTCATTTA CATACATATG TTTGTACCCA TCTCTTCCTT CTTCCCTCTT GCTACAATGG 002320 002321 AGGAAAGGTC TGTTCACTTG CTTGTTGTCT GTCTCCCTTA CCAGACTGTA AACTCCATAG GAATCAGGAT CTTGTCTGAT 002400 002401 GCAGCACGGA GACTATGACA ACGCCTGGCT ACCCCTTCTC TGAGTCCTTT GCTACCTCCG TCTCTGAAAT TTTAAATGTT 002480 002481 TTTGGCTTAA GGATTCCTCC CTGAGTGCTT TTATTTTGAT CTACACATGC TCCTTAGGTC ATCTTATTCA TTTGTGTGGT 002560 002561 TTAAAATTCT AGGTACACAC TCCATAATTT TTTAAGTAAA TAAATGAACA AATTAAAAGG TGACAAAAAG AACATGCTGA 002640 002641 TTATGTTTTA TTGCTAGCAT GTATAACATT TAAGCATGAA TGAACCATCC AGTGGAAGGT TGCTAATTGA ATTTCACTTT 002720 002721 GAGTAGGTAG CACAAAATGT TCATTATCTG CTTTTTTCTT TTATTATAAT TGAGAAGGCA GGGGCATTGA GATTAGAACA 002800 002801 TAGAAGAAGT GCAGCAAGAG AAAACACTTA AGGAAACAAG GATTAGGCTG AAACATGAAA ACTATTAAAA TGATTGCTGA 002880 002881 AAAATGCTCC TAGGACAAAG GCAGTGAGGA ATCATCCACT AAGCCTTCTT TTATCAGCTC TAAAGATGTG CGAGAAGCTC 002960 002961 AAAGGAAATG GCTCTCCCTG AGGACTACCT GGTACATCCA ACTCACAGTG TGCATCTGAT CTTGGTACCG AGAGTTCATT 003040 003041 CCTTAGAGTT CATGTGGGCT CAGAATGTCC TAATGGACAG GACACAGGCA GTCTTACCTC CGCTTTCAAT AAGCACGTCC 003120 003121 AGGAGTTCAT CCATCTGCTG ACTCCGGGTC ATTTGCTATT ACAAATTAAC CAAAGGAGGA CAGACAATTT AGAAGGTGGT 003200 003201 TATCTCCGTA GGAAATCATT AGAAGCAGCA CTGCAAGATT TTGAACTAGG TTTGGTCAAG GTATTTTTTT TCCAATTGTG 003280 003281 GCAAAATACA CATAACTTTA AATTTACTAT CAACCATTTT TAAGTGTACA GTTAAGGGGC ATTAAGTACA TTCACACAAT 003360 003361 TGTGTGACCA TCACCACCAT CTGTCTTCAG AATTCTTTTA ATCCTGCAAG ACTAAAATCG TGTATCCATT CAACCATAAT 003440 003441 TTCCCACACC CCATCCTTTA GCCCCTGGCA ACCGCCATTT TCCTTTCTGC CTTTACGAAT TTGACTATTC TATCTAAGTC 003520 003521 CCTCATAGAA GCGAATCGTA CAGGATTTAT TCTTTTGCAA CTAGCTTATT TCCCTAAGCG TAATGTCCTT AAGGTTGATC 003600 003601 TATGTTGTGA CATGTGTCAG AATTTCTTTT TTTTAAAGAC TGAATAAAAT TCCATTGTAT AGATATAACA AAAAAAAAAA 003680 003681 AAAAAAA |
Predicted Small Protein
Name | NONHSAT145701_smProtein_200:493 |
Length | 98 |
Molecular weight | 10381.0468 |
Aromaticity | 0.0309278350515 |
Instability index | 53.7195876289 |
Isoelectric point | 9.29962158203 |
Runs | 17 |
Runs residual | 0.0437189767087 |
Runs probability | 0.0360048629945 |
Amino acid sequence | MEEFKLRSVTSRKSMLKMLGLLVVRALKPGVEFGGVRSSHSMVSQGDSVKLNCSPLLSTE EGENCVCIGERGPGKISCALKRSSAAFPENPSIIPSK |
Secondary structure | LLEEEEEEELLHHHHHHHHHHHHHHHHLLLLEEELEEELLEEEELLLLEEELLLLLLLLL LLLLEEEEELLLLLEEEEEELLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |