NONHSAT145943
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145943 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1013 nt |
Genomic location |
chr17+:16342301..16345340 |
Exon number |
5 |
Exons |
16342301..16342374,16342641..16342728,16342895..16343017,16343499..16343567,16344682..16345340 |
Genome context |
|
Sequence |
000001 GGATTGGGAT ATTCCGACTC CTTAAGGGCC TGGCGCACAT AAGGTGTGAC CTTTTCATTC CCGTTGTTAT GGAGGGCCAC 000080
000081 ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTGCAAACC CGAGAGAACT 000160 000161 GGTCGCTGAA ACCTCTACAA CTTAGTTGAC CGTAACTGCC AGAGCCCTGC CCTGAATTCC TGTCCTTACT CCCTCTTTAA 000240 000241 GATTGCGTAC CCACTGCAGA GTGCTGAAGA CGGGGTAGCC ACGAGGTTGC AAATTCGTGA AGAATCAGCA TCATGTTTGG 000320 000321 CAGCTGAGTA TTGGAGCCAG GAGCCTGCCA TGAGGTTATA TTCCCAGAGG ATGTCAGTCC CAAGGACCAG TAGCTGCCAT 000400 000401 CAGTTTGGAT TCTGAAAACT AACTGGCATC AACACTGGGT GTAGAAACAT GCTTGCCTTA TGTATCAGAG GACATGCTCA 000480 000481 GCAGATCCAA GAGATATATT TGGCAACTTT TTCTAGAAAA GGCACATTGG GTATCATTCA TTACATTCTT GAGTTTTTTT 000560 000561 GGGTTTTTTT TTTTTTTTTT GAGACAGTCT TGCTGTATTG CCCAGGCTGG AGTGTGGTGG CACAATCACA GCTCATTGCA 000640 000641 TCCTCAATCA CCCAGGCCTA AGCAATCCTC CCACCTTGTA GCTGGGACTA CAGCTCACAG CACACCTGGC TAAAATTTTT 000720 000721 TTTTTGTTGA GACGGATTCT CTATGTTGCC CAGGCTGGTC TCAGGCTCCT GGGCTCAGAT GGTCCTCCTG CCTCAGCTTC 000800 000801 CAAAGGCACA GGCCAAGTTG TAGCTTTGTC CCTTGCCATC ATGCCCAACA AGAGGTTCTA TACCTTTTAA TGAATTGACT 000880 000881 TTCATAAATT GGTTATGTTG GTGGGCAAAG TTCTTTAAGC TGGAAATTGT AAATTCCTCC TGAAATGTTT TTTCATGCAG 000960 000961 TTACCATGAA CTAATACTAC AATAAAGGAT GGTCTTGGGT GTCAATTCTT GAA |
Predicted Small Protein
Name | NONHSAT145943_smProtein_473:712 |
Length | 80 |
Molecular weight | 9214.4964 |
Aromaticity | 0.189873417722 |
Instability index | 66.6151898734 |
Isoelectric point | 10.4531860352 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0156091920798 |
Amino acid sequence | MLSRSKRYIWQLFLEKAHWVSFITFLSFFGFFFFFLRQSCCIAQAGVWWHNHSSLHPQSP RPKQSSHLVAGTTAHSTPG |
Secondary structure | LLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEELLLLLLLLLLL LLLLLLEEEELLEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTooooooooooooooooo ooooooooooooooooooo |