NONHSAT146370
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT146370 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3153 nt |
Genomic location |
chr17+:18325495..18328647 |
Exon number |
1 |
Exons |
18325495..18328647 |
Genome context |
|
Sequence |
000001 GAAATGAACG CCCTTTGAGG TCAGGTGGAC AAGGATGTCA GTGTGAAGAT GGACACTGTG CCTGGAGTGA ACCTGAGCTG 000080
000081 CATCCTGAAT GAGATGCGTG ACCAGGACAA GAAACTGGTG GAGAAGAGCT GCAAGGATGC CCAGGGCTGG TTCTTCAGCG 000160 000161 TGGTGGGTGG CCGTGTGTAA GCAGGTGTGC ACACGTGTGG GCACATACGC CGTGTGCTGG TGCAGTTGGA ACACCGGCAG 000240 000241 ATTCACAGGC TGTCCCAGTT GGAAGGACTT TTGGAAACCA GTCGGACCAG CCCTTCATGT CTTCGATGTA AAATGTGAGG 000320 000321 CTCAGAGAGG ACTCAAGCTC ACACAGCCCT TCACTGTGGC CTGCAAAATA GATCCCGTTC TCTGCAAGTC TGGTCTTGGG 000400 000401 TTTCCACCAC AGCTGTTTAC AGGATGTGTG TATTTGAGTA CATACACATA CCCTTGGCAA GCACAGGCTG AGTGTGTCCG 000480 000481 GTGTCCTAGG GACAGCAACA GGTGCAAAAG AATAACACCC AGTGCCTGTC TTTGAGGTGC TGTAGTTCGG TAGGAGTAAG 000560 000561 AAATGCAAAC GACCGCAGAG CAGGTTGAAT TCCTCCAAGG TCCAACATGG GTGCAGAGAG TCTTTGTGTG CAGGTGCTTT 000640 000641 TGGGGCCCCA TAGAGGCCAG GGAGGGTTTA GGGGATGGTT CTGGGAGGCG AGGGCTCAGG AACAGCCCCT TTCCTGTGCC 000720 000721 CCACTTGTGA AAGTCTCCAT AAACCCCTGT GGCCCACTCT GCCTTCCAGA GAGAGGGGCT GAACTGCAAG GTGGCCACCA 000800 000801 ACACAGAGGC CCTGCAGAGC GGCAGGATGG AGATGTGGAG CTCTACATCT CTGTGCAGAA CCTGAGCCGT CCCAGCTCAG 000880 000881 CAAGGTAGGG CCCCTGTCCC CTCCCCACCC TGTACCTGTC ACCCCAGGGT GAGCGCAGCC TTATAGACCC CTGCTTGGAG 000960 000961 AACCAGAGTC CCCACCCAGC CTGTCCCTTC ACACTCAGTG GCTGGGTGCA CTACCACCCA ACTGTGCCGG CAGCACCCAC 001040 001041 AGCTCCATAC AGGAGGGGCT CCTCTCTAGT GCTCTGCCAT GGGGAAGGGT CCCACGTCCA TCTCATCGCA CCACCTATCT 001120 001121 CTTGGCCCAC AGAAAGCATC GCTGGAGGGC AGCCTGGTGG AGACGGAGGT GTGTTACAGG ACCCAGCTGG CCCAGCTGCA 001200 001201 GGGGCTCATC AGAAGCATGG AACAGCAGCT GTGCGAGCTC TGCTGTGATG CAGAGCACCA GGACCACGAG CACCAGGTCC 001280 001281 TTCTGGACGT GAAGACGCGG CTGGAGCAGG AGATCGCCAC CTACAGCCGC TTGCTAGAGG TTGAGGACGC CCAGTGAGTG 001360 001361 TGCACCCAGG TACCTGCTGG GGCGGGCTGG GGGCCCACTT CACCCAGGGA GAAGTTGGTG TCTGAGCACC AGCAAAGTTC 001440 001441 AGGAGGTGTG AATGTGGGAA CCTGTGGGGT TTGCAGGAGG TGAAACTGAC GATGCAGGCT GGAGTCTGAC TGAGGAGCCT 001520 001521 TGACTGCCAA GTTAAAGCGT CTGGACTAGA TCACGTAGGC AATGGGGAGC CATGGAGGGA TTTGGAGCAG AAGAAGGGAA 001600 001601 TGAACATCAA GATATTTTAG AACATTCACT CTGGCTACAG AGGGAGAAAT GGATCAGAGG GGTCAGGGTG GGGCCAGAGA 001680 001681 GACGCGTCAG GGGGCTAGAG CAGGGAGTCT GGCCAGAGAA GTCTTGCGGG GTGGAGGCTG GGTGGGGGGG CAGGGGAAGG 001760 001761 AAGGTGGTGC ACGCAGAAGA GAGGTTATAG CTCAAAACAG CAGGACTGGA TGCCTGGATC TCAGGGTAAG CGTGGCTCAC 001840 001841 GGTCAGGACT CAGTAAGCGT TGGGTGAACA CATATGAAGG AGTGGGCATT GATGGCCCTG GGTTTCTGGT TCCGATGACT 001920 001921 GTGTGAGTCC ATCAGCCACA GGGTGAAGAG CATGGTGGGT GGTGGTCGGG TTTGCAGTTG GGAAGGGTGA TCAGGCCTTC 002000 002001 AGCTGAGTGT GTCCTGGAGT CTCCATGCTT AGTCACACGT TGCAGCTTTT TGCTCCCCGA AAATGGTGAA GTCCATCTAT 002080 002081 AGTCTAACGA CAGTCTCTCC TGCTTTAATT GGGTCTATTT GTTGGGTCCT CTGGGACATG GAAAAACCAC TTGCTCAGCT 002160 002161 TCTCCTTGTA AATTCCTGGT GAGTGCCTCC AGGCCTACTG CTGTGCTGTT TCTTTTTCTT CTTCCTGCTG CACTGAACCC 002240 002241 CTGCCCTTTC ATTCTTGGGC CTGTGCTAAT TTCTGTGCAT TCCCAACTGT GATTTTTCAC CAATTTAGGG GAACCTCCTC 002320 002321 TGCCAGGGCC TGCTTCTCCC CAGCAGTGCT TGCAGGGGCC TGGGCTGGCT GGCATCCCTG GGTCGATGGG TGCTCCTCTC 002400 002401 CCTGCAGGCT GGCCACTCAG TACTCCTTGT CCCTGGCCTC GCAGCCCACC TGGGAAGGTA AGAAGCTGCC CTGTCCTGCT 002480 002481 GTGTGGACCC CAAGGCGGCG GAGAGGCTGA GGACCCTTCT GTGTGGGAGA CTGGGGGGAC CACAGACTCG GGCAGGTGGG 002560 002561 GGGAAGAGCT CCTGCCTGAT GTTCCCTGTG CCTCCCTCCT CCATCGCCTG CAGCCACAGT GACCAGCCAC CAGGTGTGCC 002640 002641 ATCGTGGAGG AAGTCCAGGT TGGAGAGGTG GTCTTCTGTA AGCAGGTCCA TCTCTCCACC CACTGAGGCC CCTTTCTGCC 002720 002721 TGTGACAGCC CCACCTCGAG GGTCATGGCA CAGCCATCAG CTGCAGCTCC CAGCATGCTA CTGCCACGCC CCGAGTGTCC 002800 002801 GTCTGGGCAC TGGTCCATGA CCTGTTGTCT TTCTGTATCT ACTTTCTGCA GCCCCTCACT GAGGAGGCCT CCTGGGTTTG 002880 002881 TCCAGTGCCT GCTATTAAAG CTTTGCTCCA AGTTCAATGC CTCGTGTGAT CTGGTCTGTT CATTGGTTTG GGGCAGTGTG 002960 002961 GGCTGAGGGA CTGGGATAGG TGGAGAGTTT ATTGAGTGTT TGGGTATTGG CTTGTCACCT GCCAATCTGT TCTGCCCACT 003040 003041 CCATCCAGGC CTGGGGCTCC TAGAAGACCA GAGGGGAGGA GGAGGAAGGA TTAAGGGTGG AGGGAAGGGA CAGCCCCTTG 003120 003121 TATTGGGAAA AGTTTCTAAG AATCAGCCCC TGA |
Predicted Small Protein
Name | NONHSAT146370_smProtein_2744:2965 |
Length | 74 |
Molecular weight | 7762.1738 |
Aromaticity | 0.0684931506849 |
Instability index | 71.7863013699 |
Isoelectric point | 8.51373291016 |
Runs | 8 |
Runs residual | 0.0345558992488 |
Runs probability | 0.0448573573573 |
Amino acid sequence | MAQPSAAAPSMLLPRPECPSGHWSMTCCLSVSTFCSPSLRRPPGFVQCLLLKLCSKFNAS CDLVCSLVWGSVG |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEEELLLLLLLLLHHHHHHHHHHHHLLLL HHHEEEEEELLLL |
PRMN | - |
PiMo | - |