NONHSAT146377
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT146377 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2947 nt |
Genomic location |
chr17+:18392856..18398254 |
Exon number |
4 |
Exons |
18392856..18394637,18395262..18395303,18395771..18396173,18397535..18398254 |
Genome context |
|
Sequence |
000001 ctcaaggccc tctcgggcca ccatgctttt gcatatgctg tccctggtcc cggaagcacc ctctgccagc ctgccctcag 000080
000081 cacacgccta atcgcccttc catgctctgc caaagtgtcg ctcctctggg agtcctccct gcccagaata ttgttggatg 000160 000161 ctccccccat gcccccacgg agtctgtaca tatctgtgcc atgccagttc acagcacccc attgtaactg tttgcgtgtc 000240 000241 tgtccctgtc actccacccc catctcccta tgcccatgag gccccagagg gctgggactg tgggtcgttc atttgcacag 000320 000321 tgcctggcac tcacttaggg actcgaagaa tggatgaatg TGGAATGTGG TTTTCGCAGC CAGGGAGAAT GGGATACCAG 000400 000401 CCAGGGCAAG AACAGTCTAC TGGGTGGGGC AGGATCCACG ACAAGGAGGT GGGCAGCCCT TCCTCTGGCC ACTCAAGCAG 000480 000481 TGGGGACTGG GAGGAGGGGC GCTTTGTCTA TGTAGCCTTT TTATGGCCCA TGATGGTACA GACAGTGCAC CTGCCTCCTG 000560 000561 CCACGCTGAC TTCAGGACTG GTGGAGCCCC AGGGAACATT CGCAGGGCAG CCAAACTTtg gccctggccc tggcgctggc 000640 000641 cctggccctA GGGATGACAg aaagtgtgct ggatacagtc agacagaatt ggctgccatt ttggatttga tcccttccac 000720 000721 ccgggcaagc ttgggcaagt tgcttaatct ttctgagcct cattgcctca ccAGGGACAC AGGAGCTGAG GCTGCTTCCC 000800 000801 TCTTTGGAAA GCACTGAAGC CCAGGACTCG GCCCACAATA GGCCTTCAAC AAATACCACT TCTCAGCTTA CGGGTGAAAT 000880 000881 ATGGCACCGG AAGTAATGCT CTTGGCTGTG GGAGCTACAG ACAGCAATGA GGTCTCTATC AAACCCAGCC TCCTCTCTCT 000960 000961 CGAGAGGAAC CAGTGGGGAT ACCCTACCCC TCAACCCCAA AGCCTTGTGC ACCTGAGGGT AAAAATCTGG GTGCCACGGG 001040 001041 CTCAGGAAGG CTTGCTTGGG AGCAAGAGGG AGGTGGGTGT GTCTGGGGAG GCATTTCTGA GCACAAGAGC CTCCCTGGAG 001120 001121 TTCTGCCATC GTCTCTCCCC GTTCTGTGGT GCCCGCAATA ACCACCGTTC TGACTCTCCT CACCCCTCCA GCCTCCCAGC 001200 001201 GTGCGGCCTG CCAACCCAGC TCCCATTGTA AGTCTCTTGC TTTCTTTTTG GATCCTCTTG ATTTTGGCTC TTCTTCTGGG 001280 001281 CTAATGGAGG ATGCAGGGCC AGGCATTGGG CCTCTCCCAT CGGGAGTGGG GAGGGCAGAG GCCAGGCCCT TGACCATCTA 001360 001361 CCCGGCCTGG CGAGGTTGGT GGGTGAATGT GGTTGGCTGG CCGTGATGGA ACAACCTGAG TTGCCACTCC ATGGGCAGCC 001440 001441 ACGGAAGACC ATGCCCCACG TTCACTTCTC TCACCTGCAA AGGGAGGCTA GGCTGAGAGA CGTTTCCCCG AGAGGAAAGA 001520 001521 TGGGCCAGAG CCACCAGCGT CCCCATCTGT CTTCTCCAGG GTCCTAACCT TTGCCTCTCC CTCGTCCCCT GGACCCACCC 001600 001601 TCCGTGGGGT CTGTGGGGCC ACTGGGCTGG TTATGCCCCT GGAGGGTGCC TGCCGTGTGG CACCCTCTGG TGGGAGCTGG 001680 001681 GGTGGTCTTT ACTCAGGAGA GCCTGGGTGA GACCTGGTTT CTTTCTTCCA GACCCAGACA GTCATCCACA CGGTGCAGAG 001760 001761 TGCCTCTGGA CAGATGTTCT CTACTCCCGC CATCCCACCT ATGATGTACC CCCACCCTGC CTATCCGATG CCTTTCATCA 001840 001841 CCACCATTCC GGGAGGGCTG TACCCATCCA AGTCCATCAT CCTGTCAGGC ACTGTCCTGC CCAGTGCTCA GAGGTAAGCC 001920 001921 AAAGGCTCCA GTGACCTCTG GGAAGAGAGA GCCCTTCAAG GTCATTCCAG CCATTCCCCT GGCTTTTGGC AGGCTGGGGA 002000 002001 TGATGGGGAG GAAATGGGGC TCAGAACTCA GTGGACAAAG GTCCAGGTAG GCTGCCCACC CCAGGTTCCA CATCAACCTG 002080 002081 TGCTCTGGGA GCCACATCGC CTTCCACATG AACCCCCGTT TTGATGAGAA TGCTGTGGTC CGTAACACCC AGATCAACAA 002160 002161 CTCTTGGGGG TCTGAGGAGC GAAGTCTGCC CCGAAAAATG CCCTTCGTCC GAGGCCAGAG CTTCTCGGTG TGGATCTTGT 002240 002241 GTGAAGCTCA CTGCCTCAAG GTGGCCGTGG ATGGTCAGCA CGTGTTTGAA TACTACCATC GCCTGAGGAA CCTGCCCACC 002320 002321 ATCAACAAAC TGGAAGTGGG TGGCGACATC CAGCTGACCC ACGTGCAGAC ATAGGCGGCT CCCTGGCCCT GGGGCCGGGG 002400 002401 GCTGGGGTGT GGGGCAGTCT GGGTCCTCTC ATCATCCCCA CTTCCCAGGC CCAGCCTTTC CAACCGTGCC TGGGATCTGG 002480 002481 GCTTTAATGC AGAGGCCATG TCCTTATCTG GTCCTGCTTC TGGCTACAGC CACCCTGGAA TCGAGAAGGC AGCTGACTGG 002560 002561 GATTGCCTTC CTCAGCCGCA GCAGCACCTG GGGCGCCAGC TGCTGGAATC CTACAATCCC AGAAGGCGGG CACAGCCAGG 002640 002641 GAGAGGGGAG GAGTGGGCAG TGAAGATGAA GCCCCATGCT CAGTCCCCTC CCATCCCCCA CGCAGCTCCA CCCCAGTCTC 002720 002721 AAGCCACCAG CTGTCTGCTC CTGGTGGGAG ATGGCCTCCT CAGCCCCTCC TCTCTGACCT TTAACCTCAC TCTCACCTTG 002800 002801 CACCCTGCAC CAACCCTTCA CCCCTCCTGG AAAGCAGGCC TGATGGCTTC CCACTGGCCT CCACCAACTG ACCAGAGTGT 002880 002881 TCTCTTCAGG GGACTGGCTC CTTTCCCAGT GTCCTTAAAA TAAAGAAATG AAAATGCTTG TTGGCAC |
Predicted Small Protein
Name | NONHSAT146377_smProtein_2123:2305 |
Length | 61 |
Molecular weight | 6591.6698 |
Aromaticity | 0.05 |
Instability index | 75.4316666667 |
Isoelectric point | 9.40362548828 |
Runs | 10 |
Runs residual | 0.0169326241135 |
Runs probability | 0.0407083554143 |
Amino acid sequence | MRMLWSVTPRSTTLGGLRSEVCPEKCPSSEARASRCGSCVKLTASRWPWMVSTCLNTTIA |
Secondary structure | LEEEEEELLLLLLLLLLLLLLLLLLLLLHHHEELLLLLEEEEEELLLEEEEELLLLLLLL |
PRMN | - |
PiMo | - |