NONHSAT147308

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT147308

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1049 nt

Genomic location

chr4+:159193282..159198934

Exon number

2

Exons

159193282..159193325,159197930..159198934

Genome context

Sequence
000001 AACACAATCA AGGGACAAAC TACATCGTGT GAGGCCAGCT CAGGCTGCTA CTACTCTGTC ATCCTAAGAG AAGAATCTCT 000080
000081 GAAATTTTGA CAGCATGTGG AAATATTCCC ACTGATTATT GGATTATGAA GATGGAGAAG AGTATTTTAA AGGAGTTTTG 000160
000161 TAGGAGCTGC AGGAGAGGAT TCAGGTATAT TTATATTCAT AGTATATGTG TAATGCTTTG TTCCTGCTCC TTCATTACTT 000240
000241 CTATTAAGAA GAGACAAGGA GAGAGACATG GAAATGACTA AGGCACCAAA GGAAAGGCAT TTTTTACATT TCAAAGTCAC 000320
000321 AGGTAAAAAA CATTTATCAT TTTCATGTGG AAACATTCTT CCAAGCTGTA ACTAATAATG GTCTCTCCTA CTATTTCCTC 000400
000401 CCACTTCTGC AGCTGCTAAA ACACCTTTGC CACCAGCTCC GACAATCAAA CCATGCCTTT GGATTTCTTC AGTTTCTAAA 000480
000481 GGGGAACATC TTTTTAAAGC CTTTGTTGTA TTAATTAAGA ATCCAGggcc aagcccgtgg ctcatgccca taatcccagc 000560
000561 actttgtgag gccaaggcag gtagatcacc tgaggtcggg agttcgagac cagcctgacc aacatggaga aaccccgtat 000640
000641 ctattaaaaa tacaaaatta gccaggcata gtggcatatg cctgtaatcg cagctattca ggaggccgag gcaggagaat 000720
000721 cgcttgaata tgggaggtgg aggctgtggt gagccgggat cgtgccattg cactccagcc tgggtgacaa gagcgaaact 000800
000801 ctgtcaccaa aaaaaaaaaa aaaTTCAGTG GCTGGCATAG AGTCAAGAAA CTCTATGAAC AGAAGATAAC TGACTTAGCA 000880
000881 GCAGCAGAGT AAGCCTCCAA AAAGAAGCAA GATCTTTGAA AGTGGCTGGG AGAGCTCCCA ACTGAATAGG CTTCAGCCTC 000960
000961 CCACTGTCAG TACTTAAGGT TCAAATGCCT CAGGCTGCGG GAGGGGACGG GGTGGAGACT GGCCATGTCG GAGGTGACCT 001040
001041 GGAGTCTGC
[back to top]

Predicted Small Protein

Name NONHSAT147308_smProtein_125:280
Length 52
Molecular weight 6091.2145
Aromaticity 0.0980392156863
Instability index 55.8411764706
Isoelectric point 9.59808349609
Runs 9
Runs residual 0.0222286934576
Runs probability 0.034357887299
Amino acid sequence MKMEKSILKEFCRSCRRGFRYIYIHSICVMLCSCSFITSIKKRQGERHGND
Secondary structure LLLHHHHHHHHHHHHHLLLEEEEEEEEEEEEEELHHHHEEHHHHLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooo