NONHSAT147533
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT147533 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1658 nt |
Genomic location |
chr7+:5870863..5887666 |
Exon number |
5 |
Exons |
5870863..5870914,5873158..5873199,5879580..5879706,5880321..5880487,5886397..5887666 |
Genome context |
|
Sequence |
000001 cgtaggagag cagacacgag gacatgagcc agttctgctg agctgttact gtATACCTGC TTTCCCACAA CAGCAAGGAA 000080
000081 GAACCATGGC CCAGGGGTCA CTGTCATTCG GGGACGTGGC TGTGGGCTTC ACCCGGAAAG AGTGGCAGCA GCTGGACCTG 000160 000161 GAGCAGAGGA CCCTGTACCA GGATGTGATG CTGGAGAACT ACAGCCACCT GCTCTCTGTG GGCTGAACTG TCTGCTTGCT 000240 000241 TGGAAGGCCC AGCTGGCTCA GCACAAATCC TTTAACCGTT TCTCCCCAAG AGGGTGTCAA GTCAGCAAAC CAGCTGTGAT 000320 000321 CTCCAGTTTG GAGCAGGGGA AGGAGCCATG GATGGAGGAG GAAGAGATAA GGACGTGGAG CTTCCCAGAA GAAGTTTGGC 000400 000401 AAGTTGCTAC CCAGCCAGAT AGCCAACAGC AACACGAAGA CCAACATTTG AGCCATACGT TTCTAGACAA GAAAGACTGG 000480 000481 ACCGGAAATG AGCTTCATGA ATGTAACGAA CTTGGAAAAA AACTCCATCA GAACCCAAAC CTCCTTCCAT CAAAACAGCA 000560 000561 GGTCCGCACA CGTGACTTGT GCAGAAAGAG TTTGATGTGT AACCTGGACT TCACTCCTAA CGCCTACCTG GCGAGGAGGA 000640 000641 GATTTCAGTG CGACGGCCAC GGAAACTTCT TCTCTGTTCG AAACTTGAAA CTCCACCTTC AGGAGCGAAT CCACGCGGAG 000720 000721 GTCACCAGTG TGGAAGTGCT TTAAGCTGTG ACGAGGGAGT TCCTGCAGCT CAGGGAGCCA GTAGTGAGAA ACCCCACGAA 000800 000801 TGCACGAAGT GTGGGAAAGC CTTGTGCTGC AGATCGGACC TCAGGGTACA TCACGGGGTC CACGCGGGGG AGAAGTCCTC 000880 000881 TGCGTGCAGT GAACGGGGGA GTGGTTTCAG GGAGAAGCTT TGCCCTGACA AACAGGGAAC TCACACAAAG GAGAAACCCG 000960 000961 CTAGAGACAG CAGAAGTGGT AAAACGATCT TCCGGAAGAC ACGCCTGTGT GTCCCGGGCA CAGTTCACGC CGGAGCGAAG 001040 001041 CCTTACAAGT GTTGGGAGTG TGAGAAAACC TCCCACAAGT CGCGCCTCAT CGAGCACCTT CGCTCCCACA CGGGGGAGAA 001120 001121 GCCCTGCGGC TGCAGGGAAT GCGGAAAGGC CTTTTTCCAG AAGTCACACC TCATCCTGCG TCAGAGGACT CACACGGGGG 001200 001201 AGAAGCCCTG CGACTGCGCG GAGTGCGGGA AAGCTGCTCC CAGGACTCCT GCCTCCTGAC CCACAGGCGG ACTCGCGGGG 001280 001281 AAGAAACCGT ACGAGTGCTC CGACTGCGGG AAGACCTCCC GGAAGGCGAA CCTCATCCGC CACCACGGGA TCCACACGAG 001360 001361 GGAGAAGCTG CATGGGTGAA GAGACCGTGG GATCGTCACA AAGTCACATC ACGAGGTCGC CGAACCTCTA GGAGGGACAT 001440 001441 CGCCAGGGAA ACAGCCCTCA ACCAAAACTA CGACGCCACC CTAGGCAGAG GTCCCATATC GGGGTGAAAT TCGGCCACTT 001520 001521 TGGTGGCTTA AGGAAGGCAT GGTCAgctgg gcgctgtggc tcacgcctgt aatcccagcg ctttgggacg ccgaggcgag 001600 001601 tggatcacct gaggtcagga gttcaagacc agtctggcca acatggtgaa agctcggc |
Predicted Small Protein
Name | NONHSAT147533_smProtein_1538:1648 |
Length | 37 |
Molecular weight | 4079.6352 |
Aromaticity | 0.138888888889 |
Instability index | 78.4944444444 |
Isoelectric point | 4.67706298828 |
Runs | 6 |
Runs residual | 0.0137917637918 |
Runs probability | 0.0257904963788 |
Amino acid sequence | MVSWALWLTPVIPALWDAEASGSPEVRSSRPVWPTW |
Secondary structure | LLEEHHHHLLLLHHHHHLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |