NONHSAT147965
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT147965 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1907 nt |
Genomic location |
chr16+:3175530..3184830 |
Exon number |
5 |
Exons |
3175530..3175967,3176013..3176446,3179811..3180201,3181669..3182106,3184625..3184830 |
Genome context |
|
Sequence |
000001 TACATGGCAC ACACTTTAAC TTCAAGTAGT TACAAATGCC AGAAAGAAAT GAACTGGGTA AAACAGGAGA GGACGGTCGG 000080
000081 AGCTTCATTG TCAGGGAAGA CCCCTCCAAG GAGGGGACAT TTAAGCTGAG ACTCAAAGGG TGAGAAGCGG TTTTACAAGG 000160 000161 ATCTGGAGTA CGAACCTTTC AAGCAAAGGG AACAGGATAA ACATGAGGAG GAGACTGGTG CCCAGTAGCT GAAATGACCC 000240 000241 CTGCCCCGAA CCTTCCCCGC CCCCACCCCA ACCCCCCCAT GTGGAGGGGA GGGGAGTGAG GAGACAGGCT GGAGAGCTGC 000320 000321 GACTTGTCAG GGGGCAGTGG CTTGAGGCTT CTCCCTGGTG TCCTGTGAAG ACAGTCCAGC CTTCCTCATC GCACGCTCCT 000400 000401 CTGGCAGCCT GAGACATGGG GTCAGGCGGG CTTCCTGCTT AAGACAGCAA TTTTTATGTT CTCAACTAAC AAAGCCCTAG 000480 000481 GCTAGTCATG GAGATGAACA CAGATCTCAC AGAGCAACCA CAGAGCTCTT CAAGGATTCA GGTGATCCTG TCATTAATGC 000560 000561 CTTTCTCAGA GACTTAGTGA AGCCAGTGTC TACTGGTAAA AGATAGCTGG GGATGGGGTG GGTACACAGG TCATGCATGA 000640 000641 TAAGGCCACT CAACATTTCC ATCTCCCTAA GGAAAAGGAG CCTTTGGTTT CCTTCTTTCC TGTCATGCCA CTTCAGCCAT 000720 000721 CTCAACCTTG TTAACTGAAG GCCACCAATG AGTCCAAATT TCAGCCAACC AATGGAGTAA ACTGCTAAAA AGCCACCAAC 000800 000801 AGCCACACAC GCTAACATTA AATTTGAAGT CTACTAAATG CACCTATATC ATTGAATTTG ATTTCTCATT TTGTAATCAA 000880 000881 TAACTAGCAC AGGTTTATAT TATGATTCGT CTGTAGCGGC CTGCCAAAGG TTCCATATAA CATCCCTGCG GCAGGAACTG 000960 000961 ACACTTCAGG CCCCACCGAA TCAGCTAGAT AACGGCCCAC ATTGCAGAGC AGCCAATCAA AACCGGAACA TATTTAGATC 001040 001041 ATTTGGTAAA CGGGACACTC AAGCAGTCCT ATAGGGAGGC CTATGTGGGG AGGAACTGAG GTCTCCTGCC AAGAGCCACG 001120 001121 TGAGTCATCC GCCTTCTAAG TGGGTCCTCC AGTGCCAGAG GACTGGGGTC CTCGTTGGTG TGGTGTCTGC AGTATCATGA 001200 001201 GAGATCTTGA GCCAGAACTG CCTAGCTTAG CAGCTCGCAT ATTTCTTTTT TTTTTTTTTT TTTTCAATTT CAATATAATT 001280 001281 TTATGCAAAT TTGCCATATA CCAGCAATGC TCAATAGAAA ATACAGTTCA TGTGCCACTT ACCAATGTAT GGCCTCTCAG 001360 001361 CCCAAACACA TCCTTTTCGT TCTGCTTTGT GATACTGAGC TGGATCACAT CTAAGCTTTG GGTGAGATCC AGTGTGATAC 001440 001441 CCAGCTGGAC CCTGTATACA GTTCCTTGCT AGCCAGCTTG ATGTTGTTCT TCGCTAATAC AGGGCGATGG ATGAACACTG 001520 001521 TCAGGTCAGA GCAGGAGGGA GGGGCTGTCT TCTCCACTGT GGCCAGCGGA GGGCAGGAGA GGTAACCAGC GGCCTTCAGT 001600 001601 TCCACTGTCC TCACCTTGGT CCGGCTCCTG CCCTTTCCAC TGTCCGCTAG CTGTGAGTTC TCGGGGCACC CACTCCCTCT 001680 001681 TCTGAGGTCC AGTCTCCACC TCCTCACCTA CTAGTTGGCA AAGAAAGACC GTGGCAGAAG GAAGAGGCCG CTCCAGCGCA 001760 001761 TCCCTTCGGG CGGAGCAGAA GCTCCACTTG TGGCTAGGCC ATGTGCCCTC TCCGTTCCTC GGGCCAGCCT TGGCTTCCCC 001840 001841 TTTTTGTCGC TCAAGGGCCA GGGTCGCAAG GAAATGTGAA AAAAAAGCGG AGACAAAAGA GAACGAG |
Predicted Small Protein
Name | NONHSAT147965_smProtein_1196:1471 |
Length | 92 |
Molecular weight | 10691.4866 |
Aromaticity | 0.197802197802 |
Instability index | 42.4593406593 |
Isoelectric point | 7.67095947266 |
Runs | 12 |
Runs residual | 0.00160256410256 |
Runs probability | 0.0377877877878 |
Amino acid sequence | MRDLEPELPSLAARIFLFFFFFFNFNIILCKFAIYQQCSIENTVHVPLTNVWPLSPNTSF SFCFVILSWITSKLWVRSSVIPSWTLYTVPC |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEELLLEEEELLLLLLLLLLLLLE EEEEEEEEEELLLEEEEEEEELLEEEEEELL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLHHHH HHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooooooooooooooTTTT TTTTTTTTTTTTTTiiiiiiiiiiiiiiiii |