Difference between revisions of "ENST00000577279.1"
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sequence = <dnaseq>CCCAGGTGTGGCAGGAGCTTTTACCTGCTCTTCGGCAGTAGCCGGCTGCCACTCAACCCCATGCCTGGGTTGTCCTCATCTAATCCGTCAGTACCAGACAGTGAACATCTCTCCCCCAGGATGCTGAGGGAGGGTCCTGGAGGGAAGGATGTGGAACTACAGCCTCTGCTCTCAAGAAGCTCAGATCTGGGCAGGGAACATCACATACCAGGGCTGTCTGTCGGGGGGGTGGAGGGCTGGGGGAGGGATAGCATTAGGGGAAATACCTAATGTAAATGACAAGTTGATGGGTGCAGCAAACCAACATGGCACATGTATACCTATGTAACAAATCTGCATGTTGTGCACGTGTACCCTAGAACTTAAAGTATAAT</dnaseq>| | sequence = <dnaseq>CCCAGGTGTGGCAGGAGCTTTTACCTGCTCTTCGGCAGTAGCCGGCTGCCACTCAACCCCATGCCTGGGTTGTCCTCATCTAATCCGTCAGTACCAGACAGTGAACATCTCTCCCCCAGGATGCTGAGGGAGGGTCCTGGAGGGAAGGATGTGGAACTACAGCCTCTGCTCTCAAGAAGCTCAGATCTGGGCAGGGAACATCACATACCAGGGCTGTCTGTCGGGGGGGTGGAGGGCTGGGGGAGGGATAGCATTAGGGGAAATACCTAATGTAAATGACAAGTTGATGGGTGCAGCAAACCAACATGGCACATGTATACCTATGTAACAAATCTGCATGTTGTGCACGTGTACCCTAGAACTTAAAGTATAAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000264920.1]] | + | [[Category:Intergenic]][[Category:ENSG00000264920.1]][[Category:lnc-SP6-2]] |
Revision as of 14:18, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000577279.1 |
| Source |
Gencode19 |
| Same with |
lnc-SP6-2:3 |
| Classification |
intergenic |
| Length |
374 nt |
| Genomic location |
chr17-:45968641..45973135 |
| Exon number |
2 |
| Exons |
45968641..45968947,45973069..45973135 |
| Genome context |
|
| Sequence |
000001 CCCAGGTGTG GCAGGAGCTT TTACCTGCTC TTCGGCAGTA GCCGGCTGCC ACTCAACCCC ATGCCTGGGT TGTCCTCATC 000080
000081 TAATCCGTCA GTACCAGACA GTGAACATCT CTCCCCCAGG ATGCTGAGGG AGGGTCCTGG AGGGAAGGAT GTGGAACTAC 000160 000161 AGCCTCTGCT CTCAAGAAGC TCAGATCTGG GCAGGGAACA TCACATACCA GGGCTGTCTG TCGGGGGGGT GGAGGGCTGG 000240 000241 GGGAGGGATA GCATTAGGGG AAATACCTAA TGTAAATGAC AAGTTGATGG GTGCAGCAAA CCAACATGGC ACATGTATAC 000320 000321 CTATGTAACA AATCTGCATG TTGTGCACGT GTACCCTAGA ACTTAAAGTA TAAT |
Predicted Small Protein
| Name | ENST00000577279.1_smProtein_305:358 |
| Length | 18 |
| Molecular weight | 1866.2589 |
| Aromaticity | 0.0588235294118 |
| Instability index | 58.3470588235 |
| Isoelectric point | 8.65679931641 |
| Runs | 5 |
| Runs residual | 0.00735294117647 |
| Runs probability | 0.0103868574457 |
| Amino acid sequence | MAHVYLCNKSACCARVP |
| Secondary structure | LLEEEELLLLHHHLLLL |
| PRMN | - |
| PiMo | - |
