Difference between revisions of "ENST00000431095.1"
| Line 42: | Line 42: | ||
sequence = <dnaseq>GGGGGTAACGGGGGAAACTGGGGAAGTGGGGAACCGAGGGGCAACCAGGGGAAGATGGGGTGCTGGAGGAGAGCTTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGATTGCAGCAGGACGTCACCAGGAGGGCGAAGCGGCCACGGGAGGGGGGCCCCGGGACATTGCGCAGCAAGGAGGCTGCAGGGGCTCGGCCTGCGGGCGCCGGTCCCACGAGGCACTGCGGCCCAGGGTCTGGTGCGGAGAGGGCCCACAGTGGACTTGGTGACGCTGTATGCCCTCACCGCTCAGCCCCTGGGGCTGGCTTGGCAGACAGTACAGCATCCAGGGGAGTCAAGGGCATGGGGCGAGACCAGACTAGGCGAGGCGGGCGGGGCGGAGTGAATGAGCTCTCAGGAGGGAGGATGGTGCAGGCAGGGGTGAGGAGCGCAGCGGGCGGCGAGCGGGAGGCACTGGCCTCCAGAGCCCGTGGCCAAGGCGGGCCTCGCGGGCGGCGACGGAGCCGGGATCGGTGCCTCAGCGTTCGGGCTGGAGACGAGGCCAGGTCTCCAGCTGGGGTGGACGTGCCCACCAGCTGCCGAAGGCCAAGACGCCAGGTCCGGTGGACGTGACAAGCAGGACATGACATGGTCCGGTGTGACGGCGAGGACAGAGGAGGCGCGTCCGGCCTTCCTGAACACCTTAGGCTGGTGGGGCTGCGGCAAGAAGCGGGTCTGTTTCTTTACTTCCTCCACGGAGTCGGCACACTATGGCTGCCCTCTGGGCTCCCAGAACCCACAACATGAAAGAAATGGTGCTACCCAGCTCAAGCCTGGGCCTTTGAATCCGGACACAAAACCCTCTAGCTTGGAAATGAATATGCTGCACTTTACAACCACTGCACTACCTGACTCAGGAATCGGCTCTGGAAGGTGAAGCTAGAGGAACCAGACCTCATCAGCCCAACATCAAAGACACCATCGGAACAGCAGCGCCCGCAGCACCCACCCCGCACCGGCGACTCCATCTTCATGGCCACCCCCTGCGGCGGACGGTTGACCACCAGCCACCACATCATCCCAGAGCTGAGCTCCTCCAGCGGGATGACGCCGTCCCCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAGCTTTCCTGTCTTTCCTTTTTTCTGAGAGATTCAAAGCCTCCACGACTCTGTTTCCCCCGTCCCTTCTGAATTTAATTTGCACTAAGTCATTTGCACTGGTTGGAGTTGTGGAGACGGCCTTGAGTCTCAGTACGAGTGTGCGTGAGTGTGAGCCACCTTGGCAAGTGCCTGTGCAGGGCCCGGCCGCCCTCCATCTGGGCCGGGTGACTGGGCGCCGGCTGTGTGCCCGAGGCCTCACCCTGCCCTCGCCTAGTCTGGAAGCTCCGACCGACATCACGGAGCAGCCTTCAAGCATTCCATTACGCCCCATCTCGCTCTGTGCCC</dnaseq>| | sequence = <dnaseq>GGGGGTAACGGGGGAAACTGGGGAAGTGGGGAACCGAGGGGCAACCAGGGGAAGATGGGGTGCTGGAGGAGAGCTTGTGGGAGCCAAGGAGCACCTTGGACATCTGGAGTCTGGCAGGATTGCAGCAGGACGTCACCAGGAGGGCGAAGCGGCCACGGGAGGGGGGCCCCGGGACATTGCGCAGCAAGGAGGCTGCAGGGGCTCGGCCTGCGGGCGCCGGTCCCACGAGGCACTGCGGCCCAGGGTCTGGTGCGGAGAGGGCCCACAGTGGACTTGGTGACGCTGTATGCCCTCACCGCTCAGCCCCTGGGGCTGGCTTGGCAGACAGTACAGCATCCAGGGGAGTCAAGGGCATGGGGCGAGACCAGACTAGGCGAGGCGGGCGGGGCGGAGTGAATGAGCTCTCAGGAGGGAGGATGGTGCAGGCAGGGGTGAGGAGCGCAGCGGGCGGCGAGCGGGAGGCACTGGCCTCCAGAGCCCGTGGCCAAGGCGGGCCTCGCGGGCGGCGACGGAGCCGGGATCGGTGCCTCAGCGTTCGGGCTGGAGACGAGGCCAGGTCTCCAGCTGGGGTGGACGTGCCCACCAGCTGCCGAAGGCCAAGACGCCAGGTCCGGTGGACGTGACAAGCAGGACATGACATGGTCCGGTGTGACGGCGAGGACAGAGGAGGCGCGTCCGGCCTTCCTGAACACCTTAGGCTGGTGGGGCTGCGGCAAGAAGCGGGTCTGTTTCTTTACTTCCTCCACGGAGTCGGCACACTATGGCTGCCCTCTGGGCTCCCAGAACCCACAACATGAAAGAAATGGTGCTACCCAGCTCAAGCCTGGGCCTTTGAATCCGGACACAAAACCCTCTAGCTTGGAAATGAATATGCTGCACTTTACAACCACTGCACTACCTGACTCAGGAATCGGCTCTGGAAGGTGAAGCTAGAGGAACCAGACCTCATCAGCCCAACATCAAAGACACCATCGGAACAGCAGCGCCCGCAGCACCCACCCCGCACCGGCGACTCCATCTTCATGGCCACCCCCTGCGGCGGACGGTTGACCACCAGCCACCACATCATCCCAGAGCTGAGCTCCTCCAGCGGGATGACGCCGTCCCCACCACCTCCCTCTTCTTCTTTTTCATCCTTCTGTCTCTTTGTTTCTGAGCTTTCCTGTCTTTCCTTTTTTCTGAGAGATTCAAAGCCTCCACGACTCTGTTTCCCCCGTCCCTTCTGAATTTAATTTGCACTAAGTCATTTGCACTGGTTGGAGTTGTGGAGACGGCCTTGAGTCTCAGTACGAGTGTGCGTGAGTGTGAGCCACCTTGGCAAGTGCCTGTGCAGGGCCCGGCCGCCCTCCATCTGGGCCGGGTGACTGGGCGCCGGCTGTGTGCCCGAGGCCTCACCCTGCCCTCGCCTAGTCTGGAAGCTCCGACCGACATCACGGAGCAGCCTTCAAGCATTCCATTACGCCCCATCTCGCTCTGTGCCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-C11orf89-2]][[Category:NONHSAG007409]] | + | [[Category:Intergenic]][[Category:lnc-C11orf89-2]][[Category:NONHSAG007409]][[Category:ENSG00000130600.11]] |
Revision as of 18:20, 15 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
ENST00000431095.1 |
| Source |
Gencode19 |
| Same with |
lnc-C11orf89-2:5,NONHSAT017471 |
| Classification |
intergenic |
| Length |
1481 nt |
| Genomic location |
chr11-:2016467..2019045 |
| Exon number |
6 |
| Exons |
2016467..2017024,2017106..2017228,2017309..2017421,2017517..2017651,2017748..2018180,2018927..2019045 |
| Genome context |
|
| Sequence |
000001 GGGGGTAACG GGGGAAACTG GGGAAGTGGG GAACCGAGGG GCAACCAGGG GAAGATGGGG TGCTGGAGGA GAGCTTGTGG 000080
000081 GAGCCAAGGA GCACCTTGGA CATCTGGAGT CTGGCAGGAT TGCAGCAGGA CGTCACCAGG AGGGCGAAGC GGCCACGGGA 000160 000161 GGGGGGCCCC GGGACATTGC GCAGCAAGGA GGCTGCAGGG GCTCGGCCTG CGGGCGCCGG TCCCACGAGG CACTGCGGCC 000240 000241 CAGGGTCTGG TGCGGAGAGG GCCCACAGTG GACTTGGTGA CGCTGTATGC CCTCACCGCT CAGCCCCTGG GGCTGGCTTG 000320 000321 GCAGACAGTA CAGCATCCAG GGGAGTCAAG GGCATGGGGC GAGACCAGAC TAGGCGAGGC GGGCGGGGCG GAGTGAATGA 000400 000401 GCTCTCAGGA GGGAGGATGG TGCAGGCAGG GGTGAGGAGC GCAGCGGGCG GCGAGCGGGA GGCACTGGCC TCCAGAGCCC 000480 000481 GTGGCCAAGG CGGGCCTCGC GGGCGGCGAC GGAGCCGGGA TCGGTGCCTC AGCGTTCGGG CTGGAGACGA GGCCAGGTCT 000560 000561 CCAGCTGGGG TGGACGTGCC CACCAGCTGC CGAAGGCCAA GACGCCAGGT CCGGTGGACG TGACAAGCAG GACATGACAT 000640 000641 GGTCCGGTGT GACGGCGAGG ACAGAGGAGG CGCGTCCGGC CTTCCTGAAC ACCTTAGGCT GGTGGGGCTG CGGCAAGAAG 000720 000721 CGGGTCTGTT TCTTTACTTC CTCCACGGAG TCGGCACACT ATGGCTGCCC TCTGGGCTCC CAGAACCCAC AACATGAAAG 000800 000801 AAATGGTGCT ACCCAGCTCA AGCCTGGGCC TTTGAATCCG GACACAAAAC CCTCTAGCTT GGAAATGAAT ATGCTGCACT 000880 000881 TTACAACCAC TGCACTACCT GACTCAGGAA TCGGCTCTGG AAGGTGAAGC TAGAGGAACC AGACCTCATC AGCCCAACAT 000960 000961 CAAAGACACC ATCGGAACAG CAGCGCCCGC AGCACCCACC CCGCACCGGC GACTCCATCT TCATGGCCAC CCCCTGCGGC 001040 001041 GGACGGTTGA CCACCAGCCA CCACATCATC CCAGAGCTGA GCTCCTCCAG CGGGATGACG CCGTCCCCAC CACCTCCCTC 001120 001121 TTCTTCTTTT TCATCCTTCT GTCTCTTTGT TTCTGAGCTT TCCTGTCTTT CCTTTTTTCT GAGAGATTCA AAGCCTCCAC 001200 001201 GACTCTGTTT CCCCCGTCCC TTCTGAATTT AATTTGCACT AAGTCATTTG CACTGGTTGG AGTTGTGGAG ACGGCCTTGA 001280 001281 GTCTCAGTAC GAGTGTGCGT GAGTGTGAGC CACCTTGGCA AGTGCCTGTG CAGGGCCCGG CCGCCCTCCA TCTGGGCCGG 001360 001361 GTGACTGGGC GCCGGCTGTG TGCCCGAGGC CTCACCCTGC CCTCGCCTAG TCTGGAAGCT CCGACCGACA TCACGGAGCA 001440 001441 GCCTTCAAGC ATTCCATTAC GCCCCATCTC GCTCTGTGCC C |
Predicted Small Protein
| Name | ENST00000431095.1_smProtein_353:622 |
| Length | 90 |
| Molecular weight | 9599.6387 |
| Aromaticity | 0.0112359550562 |
| Instability index | 82.5662921348 |
| Isoelectric point | 12.0001831055 |
| Runs | 11 |
| Runs residual | 0.0196078431373 |
| Runs probability | 0.0452939570587 |
| Amino acid sequence | MGRDQTRRGGRGGVNELSGGRMVQAGVRSAAGGEREALASRARGQGGPRGRRRSRDRCLS VRAGDEARSPAGVDVPTSCRRPRRQVRWT |
| Secondary structure | LLLLLLLLLLLLLEEELLLLEEEEEEEEELLLLHHHHHHHHHHLLLLLLLLLLLLLLEEE EELLLLLLLLLLLLLLLLLLLLLLEEEEL |
| PRMN | - |
| PiMo | - |
