Difference between revisions of "ENST00000555934.1"
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sequence = <dnaseq>TACCTAAATCTTTCATTTACTTAGAACACCATTAAACCATGTGTTAGGACGATGGCTACACCATAATCATATCATAGAGTGTTTTGTCTACAGATACACCATTATTTCTTTAAAGTGTAATTGGGCTGCCAACTATTTTATGCCAGTTTGATTAACCTAGTGACACTAAATGATCTCTCTGTATTAGGCAGTTTAACTAAAAGAATGATGAAAAATTTCTTTTCTCCTCCCATTACATTCCATTTCAAATTTGGGTGTGTTTTGACATTAAATGGCATGAAATAAAATAGTATATTGGTATTTGACTTCTGAGGGGCTGCATAAGGAAATAAACATGAGTATCCTATCTAGAACATCTGTTTTGGGTCTGAATGGTGGTATTTTCCTGCCTGCAGGCTTTTCAATCCAGGGCAGTTGTCACTGCTTCACCACGTTGAAGGGAGAATACCAATTTCCAGGATCACCAGTTTATTTTTATAGATAAAAGTTATATTATAAGATACTATTTGCCACAATAAAATCTAACCTTTCCCCAATTATTTTATTTGTTTAGCTTATCCAACAAAAGTATTAACATATACATTAACAACGTCGAAAGTAGCCTACTTTAAGAGAAAATATGCAGAAGAAGAAGATTTACATCAAGATTACCATGGGTATTTTCCAAAACACCTGATATTACCTGAGGACAGAACTTGCATTCTCAAACTTTCTCTGGAGAAGCTCAGGTTTCTTGAAGACCCAGAAACCTACTTAAGAAGGTCTGTGTTAATTAACAATTTGCTGAGGAAGATACATCTAGAGACGGAGAAAGAGAGCTATGAATACTTTAAAGAAGCTCCCTGTTATAAGACTGCATATTCTGATACAAGAAAACGGCTGAAGTTTATGGTACAGGAATGCTGTTCTCAGTCTCTCTATTATGAAGAGCTGCATTCGTATCATATTGTGCCTTATGCTTCGGAGAATGCCATTTATGAAATGGGCTACACTAGCAGCCACTTGGAGCAAAATTCTCAGTTGCTTATTTATAAAATGAATTAAAGTAACTGTTAAGTCCATTGATACTTTGTTTCTAAATGCTTGAACTGTTTATAGTGAAGATGTTAATATAAGGCACTCATTACCAGTGCACTTGATATCAAAGATGAGATGCATGCTGAACTGATTGGAGAGAGCAATGG</dnaseq>| | sequence = <dnaseq>TACCTAAATCTTTCATTTACTTAGAACACCATTAAACCATGTGTTAGGACGATGGCTACACCATAATCATATCATAGAGTGTTTTGTCTACAGATACACCATTATTTCTTTAAAGTGTAATTGGGCTGCCAACTATTTTATGCCAGTTTGATTAACCTAGTGACACTAAATGATCTCTCTGTATTAGGCAGTTTAACTAAAAGAATGATGAAAAATTTCTTTTCTCCTCCCATTACATTCCATTTCAAATTTGGGTGTGTTTTGACATTAAATGGCATGAAATAAAATAGTATATTGGTATTTGACTTCTGAGGGGCTGCATAAGGAAATAAACATGAGTATCCTATCTAGAACATCTGTTTTGGGTCTGAATGGTGGTATTTTCCTGCCTGCAGGCTTTTCAATCCAGGGCAGTTGTCACTGCTTCACCACGTTGAAGGGAGAATACCAATTTCCAGGATCACCAGTTTATTTTTATAGATAAAAGTTATATTATAAGATACTATTTGCCACAATAAAATCTAACCTTTCCCCAATTATTTTATTTGTTTAGCTTATCCAACAAAAGTATTAACATATACATTAACAACGTCGAAAGTAGCCTACTTTAAGAGAAAATATGCAGAAGAAGAAGATTTACATCAAGATTACCATGGGTATTTTCCAAAACACCTGATATTACCTGAGGACAGAACTTGCATTCTCAAACTTTCTCTGGAGAAGCTCAGGTTTCTTGAAGACCCAGAAACCTACTTAAGAAGGTCTGTGTTAATTAACAATTTGCTGAGGAAGATACATCTAGAGACGGAGAAAGAGAGCTATGAATACTTTAAAGAAGCTCCCTGTTATAAGACTGCATATTCTGATACAAGAAAACGGCTGAAGTTTATGGTACAGGAATGCTGTTCTCAGTCTCTCTATTATGAAGAGCTGCATTCGTATCATATTGTGCCTTATGCTTCGGAGAATGCCATTTATGAAATGGGCTACACTAGCAGCCACTTGGAGCAAAATTCTCAGTTGCTTATTTATAAAATGAATTAAAGTAACTGTTAAGTCCATTGATACTTTGTTTCTAAATGCTTGAACTGTTTATAGTGAAGATGTTAATATAAGGCACTCATTACCAGTGCACTTGATATCAAAGATGAGATGCATGCTGAACTGATTGGAGAGAGCAATGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000186369.5]][[Category:lnc-SYT16-2]] | + | [[Category:Intergenic]][[Category:ENSG00000186369.5]][[Category:lnc-SYT16-2]][[Category:Transcripts]] |
Revision as of 09:48, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000555934.1 |
| Source |
Gencode19 |
| Same with |
lnc-SYT16-2:6 |
| Classification |
intergenic |
| Length |
1184 nt |
| Genomic location |
chr14+:62593962..62595255 |
| Exon number |
2 |
| Exons |
62593962..62594630,62594741..62595255 |
| Genome context |
|
| Sequence |
000001 TACCTAAATC TTTCATTTAC TTAGAACACC ATTAAACCAT GTGTTAGGAC GATGGCTACA CCATAATCAT ATCATAGAGT 000080
000081 GTTTTGTCTA CAGATACACC ATTATTTCTT TAAAGTGTAA TTGGGCTGCC AACTATTTTA TGCCAGTTTG ATTAACCTAG 000160 000161 TGACACTAAA TGATCTCTCT GTATTAGGCA GTTTAACTAA AAGAATGATG AAAAATTTCT TTTCTCCTCC CATTACATTC 000240 000241 CATTTCAAAT TTGGGTGTGT TTTGACATTA AATGGCATGA AATAAAATAG TATATTGGTA TTTGACTTCT GAGGGGCTGC 000320 000321 ATAAGGAAAT AAACATGAGT ATCCTATCTA GAACATCTGT TTTGGGTCTG AATGGTGGTA TTTTCCTGCC TGCAGGCTTT 000400 000401 TCAATCCAGG GCAGTTGTCA CTGCTTCACC ACGTTGAAGG GAGAATACCA ATTTCCAGGA TCACCAGTTT ATTTTTATAG 000480 000481 ATAAAAGTTA TATTATAAGA TACTATTTGC CACAATAAAA TCTAACCTTT CCCCAATTAT TTTATTTGTT TAGCTTATCC 000560 000561 AACAAAAGTA TTAACATATA CATTAACAAC GTCGAAAGTA GCCTACTTTA AGAGAAAATA TGCAGAAGAA GAAGATTTAC 000640 000641 ATCAAGATTA CCATGGGTAT TTTCCAAAAC ACCTGATATT ACCTGAGGAC AGAACTTGCA TTCTCAAACT TTCTCTGGAG 000720 000721 AAGCTCAGGT TTCTTGAAGA CCCAGAAACC TACTTAAGAA GGTCTGTGTT AATTAACAAT TTGCTGAGGA AGATACATCT 000800 000801 AGAGACGGAG AAAGAGAGCT ATGAATACTT TAAAGAAGCT CCCTGTTATA AGACTGCATA TTCTGATACA AGAAAACGGC 000880 000881 TGAAGTTTAT GGTACAGGAA TGCTGTTCTC AGTCTCTCTA TTATGAAGAG CTGCATTCGT ATCATATTGT GCCTTATGCT 000960 000961 TCGGAGAATG CCATTTATGA AATGGGCTAC ACTAGCAGCC ACTTGGAGCA AAATTCTCAG TTGCTTATTT ATAAAATGAA 001040 001041 TTAAAGTAAC TGTTAAGTCC ATTGATACTT TGTTTCTAAA TGCTTGAACT GTTTATAGTG AAGATGTTAA TATAAGGCAC 001120 001121 TCATTACCAG TGCACTTGAT ATCAAAGATG AGATGCATGC TGAACTGATT GGAGAGAGCA ATGG |
Predicted Small Protein
| Name | ENST00000555934.1_smProtein_371:436 |
| Length | 22 |
| Molecular weight | 2297.6979 |
| Aromaticity | 0.0952380952381 |
| Instability index | 93.1285714286 |
| Isoelectric point | 10.3469848633 |
| Runs | 6 |
| Runs residual | 0.0394557823129 |
| Runs probability | 0.0347406229759 |
| Amino acid sequence | MVVFSCLQAFQSRAVVTASPR |
| Secondary structure | LEEEHHHHHHHLLEEEELLLL |
| PRMN | - |
| PiMo | - |
