Difference between revisions of "ENST00000540024.1"
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sequence = <dnaseq>ATAAAATCTGGGAGCCCAAGCAGCATATTTGTGGGATTTGTCTGACAGAACGCAATGGAAACAGAGCGTGGCATTCGCTCCATCTCCCCCAGATGTTCCATAAGTTTCTGCTTCCATCAGCAATGTAAGGAAGTGCCCAATTCCTCCTACCCCCACATTACTGAGAATCTTATCAAATTTTTTGATCTTTTCTGATTGGGCAAGGAAAGCATCTTTTGGGACCATCAAATGCATCCTGTTCCTGAAGGAGCAGAAACAGTGAAAGCGGACACTTGTCTCAGCTGGCCTCTGTCTCTAGCATGAAATCCCTGGAGAGTGATTTTGCAGCCCCTCTTCCAGAACACAGGAAAAGTCTGGGTGTGGCAAAAGGTGTCCTGAGGAGTGATGGGATGTTAGGGCATGAAGAAGAATGAAGAAGAGTGTCCAAGACAACTGGTTCATGTTGCAATTTTACTGAAGGTCAGCAAAGTGGAGAATGCTGTTCTGGGAGAACTGGATGCCTTCAGATTGTGCCAGCTCTCCAATCCTGAAGTCAAAATGGAATGCATCTCTGCTCT</dnaseq>| | sequence = <dnaseq>ATAAAATCTGGGAGCCCAAGCAGCATATTTGTGGGATTTGTCTGACAGAACGCAATGGAAACAGAGCGTGGCATTCGCTCCATCTCCCCCAGATGTTCCATAAGTTTCTGCTTCCATCAGCAATGTAAGGAAGTGCCCAATTCCTCCTACCCCCACATTACTGAGAATCTTATCAAATTTTTTGATCTTTTCTGATTGGGCAAGGAAAGCATCTTTTGGGACCATCAAATGCATCCTGTTCCTGAAGGAGCAGAAACAGTGAAAGCGGACACTTGTCTCAGCTGGCCTCTGTCTCTAGCATGAAATCCCTGGAGAGTGATTTTGCAGCCCCTCTTCCAGAACACAGGAAAAGTCTGGGTGTGGCAAAAGGTGTCCTGAGGAGTGATGGGATGTTAGGGCATGAAGAAGAATGAAGAAGAGTGTCCAAGACAACTGGTTCATGTTGCAATTTTACTGAAGGTCAGCAAAGTGGAGAATGCTGTTCTGGGAGAACTGGATGCCTTCAGATTGTGCCAGCTCTCCAATCCTGAAGTCAAAATGGAATGCATCTCTGCTCT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-TBC1D30-2]][[Category:NONHSAG011546]] | + | [[Category:Intergenic]][[Category:lnc-TBC1D30-2]][[Category:NONHSAG011546]][[Category:ENSG00000255693.1]][[Category:Transcripts]] |
Latest revision as of 17:21, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000540024.1 |
| Source |
Gencode19 |
| Same with |
lnc-TBC1D30-2:3,NONHSAT029173 |
| Classification |
intergenic |
| Length |
557 nt |
| Genomic location |
chr12+:65277554..65368391 |
| Exon number |
5 |
| Exons |
65277554..65277645,65278974..65279080,65341096..65341242,65347433..65347602,65368351..65368391 |
| Genome context |
|
| Sequence |
000001 ATAAAATCTG GGAGCCCAAG CAGCATATTT GTGGGATTTG TCTGACAGAA CGCAATGGAA ACAGAGCGTG GCATTCGCTC 000080
000081 CATCTCCCCC AGATGTTCCA TAAGTTTCTG CTTCCATCAG CAATGTAAGG AAGTGCCCAA TTCCTCCTAC CCCCACATTA 000160 000161 CTGAGAATCT TATCAAATTT TTTGATCTTT TCTGATTGGG CAAGGAAAGC ATCTTTTGGG ACCATCAAAT GCATCCTGTT 000240 000241 CCTGAAGGAG CAGAAACAGT GAAAGCGGAC ACTTGTCTCA GCTGGCCTCT GTCTCTAGCA TGAAATCCCT GGAGAGTGAT 000320 000321 TTTGCAGCCC CTCTTCCAGA ACACAGGAAA AGTCTGGGTG TGGCAAAAGG TGTCCTGAGG AGTGATGGGA TGTTAGGGCA 000400 000401 TGAAGAAGAA TGAAGAAGAG TGTCCAAGAC AACTGGTTCA TGTTGCAATT TTACTGAAGG TCAGCAAAGT GGAGAATGCT 000480 000481 GTTCTGGGAG AACTGGATGC CTTCAGATTG TGCCAGCTCT CCAATCCTGA AGTCAAAATG GAATGCATCT CTGCTCT |
Predicted Small Protein
| Name | ENST00000540024.1_smProtein_299:412 |
| Length | 38 |
| Molecular weight | 4022.5213 |
| Aromaticity | 0.027027027027 |
| Instability index | 58.3756756757 |
| Isoelectric point | 5.54534912109 |
| Runs | 7 |
| Runs residual | 0.009422266303 |
| Runs probability | 0.0433542786485 |
| Amino acid sequence | MKSLESDFAAPLPEHRKSLGVAKGVLRSDGMLGHEEE |
| Secondary structure | LLLHHHLLLLLLHHHHHHLLLLLEEEELLLLLLLLLL |
| PRMN | - |
| PiMo | - |
