Difference between revisions of "NONHSAT034952"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>cagaagtacaaaagcttgacaacatacgctgttggtaagcctggggagaaacaggtatttccacacattgctgttgggattgcaaaatggcacaactcccctggaaggaaatctggcaatatttaacaaaattacatgttcatctactctttgattcagtgactcttctagaaatctagctgatacacctccacaaatgcaaactatgatgtacagatatgatatgcaaatgcaaaataagatatgctatacagatatgctatttgcaataggaatggcttgaaaaccagtacaactacccatgaataggagactgattgaataaactagggcacatctacacGCACACACATATTTATGCATATGTATTTTTTCAAAGAAATAATAAACAAGAAATTGTTGAAAATGGAAATGGCTACTTCTGaacaatgggtgagatgggaatagggaacagggtgagagcaagaactcttggagtatctttctttatacagttttaacttttcaatcatgtaaattactcatatattcaaaaaccaaaattaagtcaaatgggaaaaaatcaaattaaacacaaacagaaacaattgaacacaaacagaaacaaatgaacagacctgaatataaaacctaatcacacaggggaaatgattacttcaaataactttagaacatagAACACTGGCAGTAACATTTTCCAGACACACATTGTAAGGACAAATAAAACTATGTTTTCTGATTTCCATTGTGTGCATGTTCCTGTAGACTGATTTCAAGTCACCAGTGgtttcacaactatctggcaagattcctgacaatttagcaattgattctcataagccggttctatctggctctaagaaatcattgCTTATAGGTACTCTAGTCAAGGTAACAAGCTGTCTGTCAACAAAGCAAAGCATAAATCAaaaaagatgaaagaaaatatctagaaaaattatgaaaagcctccatgcagattgaagtgtgacaaacacatagctccagctccttatcttccatggtcctcaggtcttgggctgtcttcatgcagtcgttagcttgttcctatggtcttcagtggaagttgtccccttcctgcagttttctgcttctggatgattcctcagtattctccatttgaggtctctgatagcaatgtcctcctgattcaagaatggctaatttctccttggtcaagaaacagggatatagctgggcacagtggctcatgactgtaatctcagcactttgggatgctgacgtgggaggatatcttgagggattgagggcaggtgtttgagaccagcctgggcaacatggcaagaccccatctcttaaaaaaaaaaaaaattagctgggtgtggtggcgcatgcctgtagtcccagctacttggaggctgaggtgggtcatttgaactggggcgtttgagtttacagtgagctatgattgcatcgctgcactccaacctgggtgacaaagaccctgtcttaaaaaaaggaagaaagaaagaaggatgcaaggatcaataccctagagttcaattgctgtgttatttgttagttagtgcctacaaggtcctttccactgaggtaaagggcagtctttttctgatgtgtccttcagcagatgaagcctctacattttaaattgtcaatggtttttgtttttgtttttttagatgcagttttgctatgttgcccaggctggagtgcagagtgcagtagtaggatcatagcactctagcaagatccagtagcaggatcatagcacacaaacttccagcctcaagcgatcctcccatctcagcctccccagttgctgggactacaggtgggtgccaccattccctactaattttttgttttttaaaaattgtttgtacacaccatgtcttgctatgttgcccaggttggtctcaaacttctggcctcaagtggttctcctgcttcagtcttccaaagtgtggggattataggtgtgagctactgttcctggcctgggattgttttgagggatatttttgaaaaggtattcatatttcttgataaAACAAATAGTTGTTGATATGAGtgtatcaattccacttatgtgaagtacctagagtagccaaattcatagtgagagaaagtagatggtggttgcaagaggctgggagaaggaggaaaatgaggggttagtgtttaatggatagagtttcagttttgcaagatgaaaaaagtttgggatggatagtggtgataggggcacaacagcgtgaatgtacttaatgccactggaccatacactgaaagatggttaaaatgctaaattttgttatgcctattttacctcagttTTTACAAAACCAAGCGTATCACCCCAGTCATAGGCAATATTGGCTATATCAGCTCGTAATAAGACAGTCTATAATGGGAGCAACATTCCCAGGCAGATAAGATGACTAAGTATCAGTTAATAGGTTGAGAATCAATGGGCTAggccaggcactgtggctcacgcttgtaatcccaatgctttggaaggccaagagagggagatcacttgaggccaggattttgagaGTTAATGGGCTACCTATGGAGTTGACTTCACTGTCATTAAGAGAAAAGGCAATAGTTTGGGTCAAGGAAGTTCAAGCGTTTCTGAAAGTTTAACTGGAGTTTGAGAATTCTATTTGTCCTTTCTATATTACTTGAGATTTGGGAAATTCTGAATAATACAAAGAATGATTGCAACTCATTGAGCAAATAAAAAGCTGAGGCCACAGTGGGgtgtgtgtgtgtgtgtgtgcgcatgtgtgtgtgtgtgtgCGACAGAGAGAGACAGATGGGAGAGTAAAAAAGAAAATGTCTTCTTTACAGGATGTTAGCTAACGAATATAGAAGAAATGACAGAATTAGggccaggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcggatggatctcctgaggtcaggagttcaagactagcctggccaaaatggcgaaaccccgtctcgactaaaaatacaaaaattagccaggcatggtggcatgcattgtaat</dnaseq>| | sequence = <dnaseq>cagaagtacaaaagcttgacaacatacgctgttggtaagcctggggagaaacaggtatttccacacattgctgttgggattgcaaaatggcacaactcccctggaaggaaatctggcaatatttaacaaaattacatgttcatctactctttgattcagtgactcttctagaaatctagctgatacacctccacaaatgcaaactatgatgtacagatatgatatgcaaatgcaaaataagatatgctatacagatatgctatttgcaataggaatggcttgaaaaccagtacaactacccatgaataggagactgattgaataaactagggcacatctacacGCACACACATATTTATGCATATGTATTTTTTCAAAGAAATAATAAACAAGAAATTGTTGAAAATGGAAATGGCTACTTCTGaacaatgggtgagatgggaatagggaacagggtgagagcaagaactcttggagtatctttctttatacagttttaacttttcaatcatgtaaattactcatatattcaaaaaccaaaattaagtcaaatgggaaaaaatcaaattaaacacaaacagaaacaattgaacacaaacagaaacaaatgaacagacctgaatataaaacctaatcacacaggggaaatgattacttcaaataactttagaacatagAACACTGGCAGTAACATTTTCCAGACACACATTGTAAGGACAAATAAAACTATGTTTTCTGATTTCCATTGTGTGCATGTTCCTGTAGACTGATTTCAAGTCACCAGTGgtttcacaactatctggcaagattcctgacaatttagcaattgattctcataagccggttctatctggctctaagaaatcattgCTTATAGGTACTCTAGTCAAGGTAACAAGCTGTCTGTCAACAAAGCAAAGCATAAATCAaaaaagatgaaagaaaatatctagaaaaattatgaaaagcctccatgcagattgaagtgtgacaaacacatagctccagctccttatcttccatggtcctcaggtcttgggctgtcttcatgcagtcgttagcttgttcctatggtcttcagtggaagttgtccccttcctgcagttttctgcttctggatgattcctcagtattctccatttgaggtctctgatagcaatgtcctcctgattcaagaatggctaatttctccttggtcaagaaacagggatatagctgggcacagtggctcatgactgtaatctcagcactttgggatgctgacgtgggaggatatcttgagggattgagggcaggtgtttgagaccagcctgggcaacatggcaagaccccatctcttaaaaaaaaaaaaaattagctgggtgtggtggcgcatgcctgtagtcccagctacttggaggctgaggtgggtcatttgaactggggcgtttgagtttacagtgagctatgattgcatcgctgcactccaacctgggtgacaaagaccctgtcttaaaaaaaggaagaaagaaagaaggatgcaaggatcaataccctagagttcaattgctgtgttatttgttagttagtgcctacaaggtcctttccactgaggtaaagggcagtctttttctgatgtgtccttcagcagatgaagcctctacattttaaattgtcaatggtttttgtttttgtttttttagatgcagttttgctatgttgcccaggctggagtgcagagtgcagtagtaggatcatagcactctagcaagatccagtagcaggatcatagcacacaaacttccagcctcaagcgatcctcccatctcagcctccccagttgctgggactacaggtgggtgccaccattccctactaattttttgttttttaaaaattgtttgtacacaccatgtcttgctatgttgcccaggttggtctcaaacttctggcctcaagtggttctcctgcttcagtcttccaaagtgtggggattataggtgtgagctactgttcctggcctgggattgttttgagggatatttttgaaaaggtattcatatttcttgataaAACAAATAGTTGTTGATATGAGtgtatcaattccacttatgtgaagtacctagagtagccaaattcatagtgagagaaagtagatggtggttgcaagaggctgggagaaggaggaaaatgaggggttagtgtttaatggatagagtttcagttttgcaagatgaaaaaagtttgggatggatagtggtgataggggcacaacagcgtgaatgtacttaatgccactggaccatacactgaaagatggttaaaatgctaaattttgttatgcctattttacctcagttTTTACAAAACCAAGCGTATCACCCCAGTCATAGGCAATATTGGCTATATCAGCTCGTAATAAGACAGTCTATAATGGGAGCAACATTCCCAGGCAGATAAGATGACTAAGTATCAGTTAATAGGTTGAGAATCAATGGGCTAggccaggcactgtggctcacgcttgtaatcccaatgctttggaaggccaagagagggagatcacttgaggccaggattttgagaGTTAATGGGCTACCTATGGAGTTGACTTCACTGTCATTAAGAGAAAAGGCAATAGTTTGGGTCAAGGAAGTTCAAGCGTTTCTGAAAGTTTAACTGGAGTTTGAGAATTCTATTTGTCCTTTCTATATTACTTGAGATTTGGGAAATTCTGAATAATACAAAGAATGATTGCAACTCATTGAGCAAATAAAAAGCTGAGGCCACAGTGGGgtgtgtgtgtgtgtgtgtgcgcatgtgtgtgtgtgtgtgCGACAGAGAGAGACAGATGGGAGAGTAAAAAAGAAAATGTCTTCTTTACAGGATGTTAGCTAACGAATATAGAAGAAATGACAGAATTAGggccaggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcggatggatctcctgaggtcaggagttcaagactagcctggccaaaatggcgaaaccccgtctcgactaaaaatacaaaaattagccaggcatggtggcatgcattgtaat</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG014075]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:29, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034952 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3067 nt |
Genomic location |
chr13+:100720931..100723997 |
Exon number |
1 |
Exons |
100720931..100723997 |
Genome context |
|
Sequence |
000001 cagaagtaca aaagcttgac aacatacgct gttggtaagc ctggggagaa acaggtattt ccacacattg ctgttgggat 000080
000081 tgcaaaatgg cacaactccc ctggaaggaa atctggcaat atttaacaaa attacatgtt catctactct ttgattcagt 000160 000161 gactcttcta gaaatctagc tgatacacct ccacaaatgc aaactatgat gtacagatat gatatgcaaa tgcaaaataa 000240 000241 gatatgctat acagatatgc tatttgcaat aggaatggct tgaaaaccag tacaactacc catgaatagg agactgattg 000320 000321 aataaactag ggcacatcta cacGCACACA CATATTTATG CATATGTATT TTTTCAAAGA AATAATAAAC AAGAAATTGT 000400 000401 TGAAAATGGA AATGGCTACT TCTGaacaat gggtgagatg ggaataggga acagggtgag agcaagaact cttggagtat 000480 000481 ctttctttat acagttttaa cttttcaatc atgtaaatta ctcatatatt caaaaaccaa aattaagtca aatgggaaaa 000560 000561 aatcaaatta aacacaaaca gaaacaattg aacacaaaca gaaacaaatg aacagacctg aatataaaac ctaatcacac 000640 000641 aggggaaatg attacttcaa ataactttag aacatagAAC ACTGGCAGTA ACATTTTCCA GACACACATT GTAAGGACAA 000720 000721 ATAAAACTAT GTTTTCTGAT TTCCATTGTG TGCATGTTCC TGTAGACTGA TTTCAAGTCA CCAGTGgttt cacaactatc 000800 000801 tggcaagatt cctgacaatt tagcaattga ttctcataag ccggttctat ctggctctaa gaaatcattg CTTATAGGTA 000880 000881 CTCTAGTCAA GGTAACAAGC TGTCTGTCAA CAAAGCAAAG CATAAATCAa aaaagatgaa agaaaatatc tagaaaaatt 000960 000961 atgaaaagcc tccatgcaga ttgaagtgtg acaaacacat agctccagct ccttatcttc catggtcctc aggtcttggg 001040 001041 ctgtcttcat gcagtcgtta gcttgttcct atggtcttca gtggaagttg tccccttcct gcagttttct gcttctggat 001120 001121 gattcctcag tattctccat ttgaggtctc tgatagcaat gtcctcctga ttcaagaatg gctaatttct ccttggtcaa 001200 001201 gaaacaggga tatagctggg cacagtggct catgactgta atctcagcac tttgggatgc tgacgtggga ggatatcttg 001280 001281 agggattgag ggcaggtgtt tgagaccagc ctgggcaaca tggcaagacc ccatctctta aaaaaaaaaa aaattagctg 001360 001361 ggtgtggtgg cgcatgcctg tagtcccagc tacttggagg ctgaggtggg tcatttgaac tggggcgttt gagtttacag 001440 001441 tgagctatga ttgcatcgct gcactccaac ctgggtgaca aagaccctgt cttaaaaaaa ggaagaaaga aagaaggatg 001520 001521 caaggatcaa taccctagag ttcaattgct gtgttatttg ttagttagtg cctacaaggt cctttccact gaggtaaagg 001600 001601 gcagtctttt tctgatgtgt ccttcagcag atgaagcctc tacattttaa attgtcaatg gtttttgttt ttgttttttt 001680 001681 agatgcagtt ttgctatgtt gcccaggctg gagtgcagag tgcagtagta ggatcatagc actctagcaa gatccagtag 001760 001761 caggatcata gcacacaaac ttccagcctc aagcgatcct cccatctcag cctccccagt tgctgggact acaggtgggt 001840 001841 gccaccattc cctactaatt ttttgttttt taaaaattgt ttgtacacac catgtcttgc tatgttgccc aggttggtct 001920 001921 caaacttctg gcctcaagtg gttctcctgc ttcagtcttc caaagtgtgg ggattatagg tgtgagctac tgttcctggc 002000 002001 ctgggattgt tttgagggat atttttgaaa aggtattcat atttcttgat aaAACAAATA GTTGTTGATA TGAGtgtatc 002080 002081 aattccactt atgtgaagta cctagagtag ccaaattcat agtgagagaa agtagatggt ggttgcaaga ggctgggaga 002160 002161 aggaggaaaa tgaggggtta gtgtttaatg gatagagttt cagttttgca agatgaaaaa agtttgggat ggatagtggt 002240 002241 gataggggca caacagcgtg aatgtactta atgccactgg accatacact gaaagatggt taaaatgcta aattttgtta 002320 002321 tgcctatttt acctcagttT TTACAAAACC AAGCGTATCA CCCCAGTCAT AGGCAATATT GGCTATATCA GCTCGTAATA 002400 002401 AGACAGTCTA TAATGGGAGC AACATTCCCA GGCAGATAAG ATGACTAAGT ATCAGTTAAT AGGTTGAGAA TCAATGGGCT 002480 002481 Aggccaggca ctgtggctca cgcttgtaat cccaatgctt tggaaggcca agagagggag atcacttgag gccaggattt 002560 002561 tgagaGTTAA TGGGCTACCT ATGGAGTTGA CTTCACTGTC ATTAAGAGAA AAGGCAATAG TTTGGGTCAA GGAAGTTCAA 002640 002641 GCGTTTCTGA AAGTTTAACT GGAGTTTGAG AATTCTATTT GTCCTTTCTA TATTACTTGA GATTTGGGAA ATTCTGAATA 002720 002721 ATACAAAGAA TGATTGCAAC TCATTGAGCA AATAAAAAGC TGAGGCCACA GTGGGgtgtg tgtgtgtgtg tgtgcgcatg 002800 002801 tgtgtgtgtg tgtgCGACAG AGAGAGACAG ATGGGAGAGT AAAAAAGAAA ATGTCTTCTT TACAGGATGT TAGCTAACGA 002880 002881 ATATAGAAGA AATGACAGAA TTAGggccag gtgcggtggc tcatgcctgt aatcccagca ctttgggagg ccgaggcgga 002960 002961 tggatctcct gaggtcagga gttcaagact agcctggcca aaatggcgaa accccgtctc gactaaaaat acaaaaatta 003040 003041 gccaggcatg gtggcatgca ttgtaat |
Predicted Small Protein
Name | NONHSAT034952_smProtein_1070:1234 |
Length | 55 |
Molecular weight | 6103.9345 |
Aromaticity | 0.148148148148 |
Instability index | 64.3685185185 |
Isoelectric point | 4.74920654297 |
Runs | 9 |
Runs residual | 0.00397470641373 |
Runs probability | 0.0412961981589 |
Amino acid sequence | MVFSGSCPLPAVFCFWMIPQYSPFEVSDSNVLLIQEWLISPWSRNRDIAGHSGS |
Secondary structure | LEELLLLLLLLEEEEEELLLLLLLEEELLLHHHHHHHHLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |