Difference between revisions of "NONHSAT052823"
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sequence = <dnaseq>GGCGGAGCGAGGCCTGGGTAGGGTGAGCGGCCTCCGAAGCGGAGCGGGGCTCTGAGGAGACACTTTTTcttcctccctccttccctcctctcctcctgccttcccttcccctttcctcccctctctccTCCTTCTCCCCTCGGTCAGCCGGAGCCTGCTGGGGCGAGCGGTTGGTATTGCAGGCGCTTACTCTCCGGGGCCGCCCGGCGAGTAGCTGGCCGGGGAAGGAGGCAGGAACCGCGATGGCGCCTCAGAAGCACGGCGGTGGGGGAGGGGGCGGCTCGGGGCCCAGCGCGGGGTCcgggggaggcggcttcgggggttcggcggcgacggcttcgagcggcaaatccggcggcgggggctgtggaggcggtggcagTTACTCGGCCTCCTCCTCCTCCGCGGCGTTACCGGTGAAGAAGTCGAAAATGGAGCACGTCCAGGCTGACCACGAGCTTTTCCTCCAGGCCTTTGAGAAGCCAACACAGATCTATAGATTTCTTTGAACTCGGAATCTCATAGCACCAATATTTTTGCACAGAACTCTTACTTACATGTCTCATCGAAACTCCAGAACAAACATCAAAAGCTTGTCAGCTCATTTGCAGCTTACATTTTTGGTTTCTTCCACAAAAATGATAAGCCATCACCAAACTCAGAAAATGAACAAAATTCTGTTACCCTGGAAGTCCTGCTTGTGAAAGTTTGCCACAAAAAAAGAAAGGATGTATGTTGTCCAATAAGGCAAGTTCCCACAGGTAAAAAGCAGGTGCCTTTGAATCCTGACCTCAATCAAACAAAACCTGGAAATTTCCCGTCCCTTGCAGTTTCCAGTAATGAATTTGAACCTAGTAACAGCCACATGGTGAAGTCTTACTCGTTGCTATTTAGAGTGACTCGTCCAAGAAGAAGAGAGTTTAATGGAATGATTAATGGAGAAACCATGAAAATATTGGTAATTTTTTTTTTTACTAGATTTTAT</dnaseq>| | sequence = <dnaseq>GGCGGAGCGAGGCCTGGGTAGGGTGAGCGGCCTCCGAAGCGGAGCGGGGCTCTGAGGAGACACTTTTTcttcctccctccttccctcctctcctcctgccttcccttcccctttcctcccctctctccTCCTTCTCCCCTCGGTCAGCCGGAGCCTGCTGGGGCGAGCGGTTGGTATTGCAGGCGCTTACTCTCCGGGGCCGCCCGGCGAGTAGCTGGCCGGGGAAGGAGGCAGGAACCGCGATGGCGCCTCAGAAGCACGGCGGTGGGGGAGGGGGCGGCTCGGGGCCCAGCGCGGGGTCcgggggaggcggcttcgggggttcggcggcgacggcttcgagcggcaaatccggcggcgggggctgtggaggcggtggcagTTACTCGGCCTCCTCCTCCTCCGCGGCGTTACCGGTGAAGAAGTCGAAAATGGAGCACGTCCAGGCTGACCACGAGCTTTTCCTCCAGGCCTTTGAGAAGCCAACACAGATCTATAGATTTCTTTGAACTCGGAATCTCATAGCACCAATATTTTTGCACAGAACTCTTACTTACATGTCTCATCGAAACTCCAGAACAAACATCAAAAGCTTGTCAGCTCATTTGCAGCTTACATTTTTGGTTTCTTCCACAAAAATGATAAGCCATCACCAAACTCAGAAAATGAACAAAATTCTGTTACCCTGGAAGTCCTGCTTGTGAAAGTTTGCCACAAAAAAAGAAAGGATGTATGTTGTCCAATAAGGCAAGTTCCCACAGGTAAAAAGCAGGTGCCTTTGAATCCTGACCTCAATCAAACAAAACCTGGAAATTTCCCGTCCCTTGCAGTTTCCAGTAATGAATTTGAACCTAGTAACAGCCACATGGTGAAGTCTTACTCGTTGCTATTTAGAGTGACTCGTCCAAGAAGAAGAGAGTTTAATGGAATGATTAATGGAGAAACCATGAAAATATTGGTAATTTTTTTTTTTACTAGATTTTAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG021408]] | + | [[Category:Intergenic]][[Category:NONHSAG021408]][[Category:Transcripts]] |
Latest revision as of 22:14, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT052823 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
985 nt |
| Genomic location |
chr17+:29058662..29096109 |
| Exon number |
6 |
| Exons |
29058662..29059141,29061915..29061961,29062051..29062115,29086509..29086557,29093521..29093606,29095852..29096109 |
| Genome context |
|
| Sequence |
000001 GGCGGAGCGA GGCCTGGGTA GGGTGAGCGG CCTCCGAAGC GGAGCGGGGC TCTGAGGAGA CACTTTTTct tcctccctcc 000080
000081 ttccctcctc tcctcctgcc ttcccttccc ctttcctccc ctctctccTC CTTCTCCCCT CGGTCAGCCG GAGCCTGCTG 000160 000161 GGGCGAGCGG TTGGTATTGC AGGCGCTTAC TCTCCGGGGC CGCCCGGCGA GTAGCTGGCC GGGGAAGGAG GCAGGAACCG 000240 000241 CGATGGCGCC TCAGAAGCAC GGCGGTGGGG GAGGGGGCGG CTCGGGGCCC AGCGCGGGGT Ccgggggagg cggcttcggg 000320 000321 ggttcggcgg cgacggcttc gagcggcaaa tccggcggcg ggggctgtgg aggcggtggc agTTACTCGG CCTCCTCCTC 000400 000401 CTCCGCGGCG TTACCGGTGA AGAAGTCGAA AATGGAGCAC GTCCAGGCTG ACCACGAGCT TTTCCTCCAG GCCTTTGAGA 000480 000481 AGCCAACACA GATCTATAGA TTTCTTTGAA CTCGGAATCT CATAGCACCA ATATTTTTGC ACAGAACTCT TACTTACATG 000560 000561 TCTCATCGAA ACTCCAGAAC AAACATCAAA AGCTTGTCAG CTCATTTGCA GCTTACATTT TTGGTTTCTT CCACAAAAAT 000640 000641 GATAAGCCAT CACCAAACTC AGAAAATGAA CAAAATTCTG TTACCCTGGA AGTCCTGCTT GTGAAAGTTT GCCACAAAAA 000720 000721 AAGAAAGGAT GTATGTTGTC CAATAAGGCA AGTTCCCACA GGTAAAAAGC AGGTGCCTTT GAATCCTGAC CTCAATCAAA 000800 000801 CAAAACCTGG AAATTTCCCG TCCCTTGCAG TTTCCAGTAA TGAATTTGAA CCTAGTAACA GCCACATGGT GAAGTCTTAC 000880 000881 TCGTTGCTAT TTAGAGTGAC TCGTCCAAGA AGAAGAGAGT TTAATGGAAT GATTAATGGA GAAACCATGA AAATATTGGT 000960 000961 AATTTTTTTT TTTACTAGAT TTTAT |
Predicted Small Protein
| Name | NONHSAT052823_smProtein_242:508 |
| Length | 89 |
| Molecular weight | 8303.9864 |
| Aromaticity | 0.0681818181818 |
| Instability index | 52.9045454545 |
| Isoelectric point | 9.30242919922 |
| Runs | 14 |
| Runs residual | 0.0277272727273 |
| Runs probability | 0.0368057132763 |
| Amino acid sequence | MAPQKHGGGGGGGSGPSAGSGGGGFGGSAATASSGKSGGGGCGGGGSYSASSSSAALPVK KSKMEHVQADHELFLQAFEKPTQIYRFL |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHEEEELLLLLLLLLLLLLEEEELLLLEEELLL LLLLEEEELLHHHHHHHHLLLLLEEEEL |
| PRMN | - |
| PiMo | - |
