Difference between revisions of "NONHSAT053371"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
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sequence = <dnaseq>GCAGTGGCGCCATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGACTACAGGTGCCCACCATGCCCAGCTAATTATTTTGTATTTTTAGTAGAGACAGTGTTTCACCATGTTAGCTAGGATGGTCTTGATCTCCTGGCCTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGAAGGTGGGTGGATCACCTGAGGTCAGGAGGTCGAGACCATCCTAACCAACACGGTGAAACCCCATCTCTACTAAAAATATAAAATTAGTTGGTCATGGTGGCACATGCCTGTAATCCCAGTTATTTGGGAGGCTGAGACAGGAGAACTGCTTGAACCCAGGGGTTGGAGGTTACAGTGAGCTGAGATCTCACCACTGCACAGCAGCCCAGGCGACAGTGCAAGACTTTGTCTCAAAAAAAAAAAAAAGTCTCTTAACAAAAACCAAGCCAGACACAGCAGTCCATGCTTGTAATCTCAGCGCTTTGGGAGGCTAAGGCAGGGAGGATCACTTAAGGTCAAGGGATTAAGGTTGCAGTGAGCTACGATCAAGCCACTGCATTCTTGCTTGGGCGACAGAGCGAGACCCTCTCTTAAATTAAACCCTCTTTAAAAAACCCCTCAATTATTCTCTCTGGGTGTGGTGGCTCATACCTGTAATCCCAGCAGTTTGAGAGTCCAAGGCAGGAGGATCGCTTGAGGCCAGGAGTTCCAGACCAGTCTGAGCAACATAATAAGACACTATCTCTACAAAAAATTATTTTAAAAACATTTAAAAAAACAAAAGCTAGTAGTTCTTTGCCCTGCCTGATCCCACTTTTAGTCATGCTACCCAAAGGCAACTACTTGCCAGATCTTAGATATTTTCTTACTGTTATAGTAAATAATCTGTTAGTGTAAATGAGCTCTCATACACTCCTAGTCCCATGTTTCTTCTATCCCTATCTTTCCAATATGGTTACATCAGAATTTTTGGTTCAGTGAGTATGTGGATTCATACTTGTATGATATATAAATATTGTTTACTGATACTTTTCATTCCTAAGCCAAGCAGAATATGGAGGTTACATTTCCTTTCTTGTATGATTTGTATATTTTTTCCTAGTGTCAGTATTTGCTTCCTGCAATCTAAACCATGTCTTTGAGTTCTAGGAAATTTTCTTGTATTATTTCTTTGATAACTTCTTTCTTCTCCCTACAAGGTCTCACTCTGTTGCCTAGGTTGGAGTGCAGTGGGGCGATCATGGCTTACTGCAGCCTCACACTCCCAGGTTCAACTGATCCTCCTACCTCAGCCTTCCAAATAGTTGGGGCTACACGGGTGCCACCATGCCCAACTAATTAAAAAAAAATTTTTTTTTTGCAGAGATGGGAGGTCTCACTTTGTTGCCTAGGCTGGTCTTGAACTCTTGGACTCAAGCAATCCTCCTGCCTAAGCCTCCCAAAGTGCTGGGATTACGGGCTAGAGCCACTGTGCCTGGCAATCGTTTTTGTTTTTTTTTTTTAAGCCTCCTACTCTCATTTGAATGCTCTAATATCTTTCATTTATTATCTGAAGCAGATTTTTAATAGTAAATTGTTTTTCGTTTGGAGGTTTTTATTTTTTTTTGAGACAGAGACTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCCGCCTCCTCGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACACACCACCACACCCAGCTTATTTTTGTAATTTTAGTAGAGACAGGGTTTCCCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACGTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCCTATTTATTATTTTCTGAGGCTAAGTTATTCCTTCAGCTTCTGGCTTCTAGCTTAGTCCTAAAGTAGTGTACTCATGGGCTGTGTCATGAATTTCTAGTCTCCAATGGGTAGTTAGATGGTAGATGTTAACAGTTACATGGATAACCTAGTCTTCTGTTCTTCTGTCAATTGTTGAGCAAACCATTGGGATATAATTGCTACAAGTTTAGGTTCCTG</dnaseq>|
 
sequence = <dnaseq>GCAGTGGCGCCATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGACTACAGGTGCCCACCATGCCCAGCTAATTATTTTGTATTTTTAGTAGAGACAGTGTTTCACCATGTTAGCTAGGATGGTCTTGATCTCCTGGCCTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGAAGGTGGGTGGATCACCTGAGGTCAGGAGGTCGAGACCATCCTAACCAACACGGTGAAACCCCATCTCTACTAAAAATATAAAATTAGTTGGTCATGGTGGCACATGCCTGTAATCCCAGTTATTTGGGAGGCTGAGACAGGAGAACTGCTTGAACCCAGGGGTTGGAGGTTACAGTGAGCTGAGATCTCACCACTGCACAGCAGCCCAGGCGACAGTGCAAGACTTTGTCTCAAAAAAAAAAAAAAGTCTCTTAACAAAAACCAAGCCAGACACAGCAGTCCATGCTTGTAATCTCAGCGCTTTGGGAGGCTAAGGCAGGGAGGATCACTTAAGGTCAAGGGATTAAGGTTGCAGTGAGCTACGATCAAGCCACTGCATTCTTGCTTGGGCGACAGAGCGAGACCCTCTCTTAAATTAAACCCTCTTTAAAAAACCCCTCAATTATTCTCTCTGGGTGTGGTGGCTCATACCTGTAATCCCAGCAGTTTGAGAGTCCAAGGCAGGAGGATCGCTTGAGGCCAGGAGTTCCAGACCAGTCTGAGCAACATAATAAGACACTATCTCTACAAAAAATTATTTTAAAAACATTTAAAAAAACAAAAGCTAGTAGTTCTTTGCCCTGCCTGATCCCACTTTTAGTCATGCTACCCAAAGGCAACTACTTGCCAGATCTTAGATATTTTCTTACTGTTATAGTAAATAATCTGTTAGTGTAAATGAGCTCTCATACACTCCTAGTCCCATGTTTCTTCTATCCCTATCTTTCCAATATGGTTACATCAGAATTTTTGGTTCAGTGAGTATGTGGATTCATACTTGTATGATATATAAATATTGTTTACTGATACTTTTCATTCCTAAGCCAAGCAGAATATGGAGGTTACATTTCCTTTCTTGTATGATTTGTATATTTTTTCCTAGTGTCAGTATTTGCTTCCTGCAATCTAAACCATGTCTTTGAGTTCTAGGAAATTTTCTTGTATTATTTCTTTGATAACTTCTTTCTTCTCCCTACAAGGTCTCACTCTGTTGCCTAGGTTGGAGTGCAGTGGGGCGATCATGGCTTACTGCAGCCTCACACTCCCAGGTTCAACTGATCCTCCTACCTCAGCCTTCCAAATAGTTGGGGCTACACGGGTGCCACCATGCCCAACTAATTAAAAAAAAATTTTTTTTTTGCAGAGATGGGAGGTCTCACTTTGTTGCCTAGGCTGGTCTTGAACTCTTGGACTCAAGCAATCCTCCTGCCTAAGCCTCCCAAAGTGCTGGGATTACGGGCTAGAGCCACTGTGCCTGGCAATCGTTTTTGTTTTTTTTTTTTAAGCCTCCTACTCTCATTTGAATGCTCTAATATCTTTCATTTATTATCTGAAGCAGATTTTTAATAGTAAATTGTTTTTCGTTTGGAGGTTTTTATTTTTTTTTGAGACAGAGACTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCCGCCTCCTCGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACACACCACCACACCCAGCTTATTTTTGTAATTTTAGTAGAGACAGGGTTTCCCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACGTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCCTATTTATTATTTTCTGAGGCTAAGTTATTCCTTCAGCTTCTGGCTTCTAGCTTAGTCCTAAAGTAGTGTACTCATGGGCTGTGTCATGAATTTCTAGTCTCCAATGGGTAGTTAGATGGTAGATGTTAACAGTTACATGGATAACCTAGTCTTCTGTTCTTCTGTCAATTGTTGAGCAAACCATTGGGATATAATTGCTACAAGTTTAGGTTCCTG</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:Transcripts]]

Latest revision as of 22:16, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT053371

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2141 nt

Genomic location

chr17-:36959384..36964273

Exon number

3

Exons

36959384..36960643,36961651..36962315,36964058..36964273

Genome context

Sequence
000001 GCAGTGGCGC CATCTCGGCT CACTGCAAGC TCTGCCTCCT GGGTTCATGC CATTCTCCTG CCTCAGCTTC CCAAGTAGCT 000080
000081 GGGACTACAG GTGCCCACCA TGCCCAGCTA ATTATTTTGT ATTTTTAGTA GAGACAGTGT TTCACCATGT TAGCTAGGAT 000160
000161 GGTCTTGATC TCCTGGCCTC GTGATCTGCC TGCCTCAGCC TCCCAAAGTG CTGGGAAGGT GGGTGGATCA CCTGAGGTCA 000240
000241 GGAGGTCGAG ACCATCCTAA CCAACACGGT GAAACCCCAT CTCTACTAAA AATATAAAAT TAGTTGGTCA TGGTGGCACA 000320
000321 TGCCTGTAAT CCCAGTTATT TGGGAGGCTG AGACAGGAGA ACTGCTTGAA CCCAGGGGTT GGAGGTTACA GTGAGCTGAG 000400
000401 ATCTCACCAC TGCACAGCAG CCCAGGCGAC AGTGCAAGAC TTTGTCTCAA AAAAAAAAAA AAGTCTCTTA ACAAAAACCA 000480
000481 AGCCAGACAC AGCAGTCCAT GCTTGTAATC TCAGCGCTTT GGGAGGCTAA GGCAGGGAGG ATCACTTAAG GTCAAGGGAT 000560
000561 TAAGGTTGCA GTGAGCTACG ATCAAGCCAC TGCATTCTTG CTTGGGCGAC AGAGCGAGAC CCTCTCTTAA ATTAAACCCT 000640
000641 CTTTAAAAAA CCCCTCAATT ATTCTCTCTG GGTGTGGTGG CTCATACCTG TAATCCCAGC AGTTTGAGAG TCCAAGGCAG 000720
000721 GAGGATCGCT TGAGGCCAGG AGTTCCAGAC CAGTCTGAGC AACATAATAA GACACTATCT CTACAAAAAA TTATTTTAAA 000800
000801 AACATTTAAA AAAACAAAAG CTAGTAGTTC TTTGCCCTGC CTGATCCCAC TTTTAGTCAT GCTACCCAAA GGCAACTACT 000880
000881 TGCCAGATCT TAGATATTTT CTTACTGTTA TAGTAAATAA TCTGTTAGTG TAAATGAGCT CTCATACACT CCTAGTCCCA 000960
000961 TGTTTCTTCT ATCCCTATCT TTCCAATATG GTTACATCAG AATTTTTGGT TCAGTGAGTA TGTGGATTCA TACTTGTATG 001040
001041 ATATATAAAT ATTGTTTACT GATACTTTTC ATTCCTAAGC CAAGCAGAAT ATGGAGGTTA CATTTCCTTT CTTGTATGAT 001120
001121 TTGTATATTT TTTCCTAGTG TCAGTATTTG CTTCCTGCAA TCTAAACCAT GTCTTTGAGT TCTAGGAAAT TTTCTTGTAT 001200
001201 TATTTCTTTG ATAACTTCTT TCTTCTCCCT ACAAGGTCTC ACTCTGTTGC CTAGGTTGGA GTGCAGTGGG GCGATCATGG 001280
001281 CTTACTGCAG CCTCACACTC CCAGGTTCAA CTGATCCTCC TACCTCAGCC TTCCAAATAG TTGGGGCTAC ACGGGTGCCA 001360
001361 CCATGCCCAA CTAATTAAAA AAAAATTTTT TTTTTGCAGA GATGGGAGGT CTCACTTTGT TGCCTAGGCT GGTCTTGAAC 001440
001441 TCTTGGACTC AAGCAATCCT CCTGCCTAAG CCTCCCAAAG TGCTGGGATT ACGGGCTAGA GCCACTGTGC CTGGCAATCG 001520
001521 TTTTTGTTTT TTTTTTTTAA GCCTCCTACT CTCATTTGAA TGCTCTAATA TCTTTCATTT ATTATCTGAA GCAGATTTTT 001600
001601 AATAGTAAAT TGTTTTTCGT TTGGAGGTTT TTATTTTTTT TTGAGACAGA GACTCACTCT GTCACCCAGG CTGGAGTGCA 001680
001681 GTGGTGCGAT CTTGGCTCAC TGCAACCTCC GCCTCCTCGG TTCAAGCGAT TCTCCTGCCT CAGCCTCCCA AGTAGCTGGG 001760
001761 ATTACAGGCA CACACCACCA CACCCAGCTT ATTTTTGTAA TTTTAGTAGA GACAGGGTTT CCCCATGTTG GCCAGGCTGG 001840
001841 TCTCGAACTC CTGACGTCAG GTGATCTGCC CGCCTTGGCC TCCCAAAGTG CTGGGATTAC AGGCGTGAGC CACCATGCCT 001920
001921 GGCCCTATTT ATTATTTTCT GAGGCTAAGT TATTCCTTCA GCTTCTGGCT TCTAGCTTAG TCCTAAAGTA GTGTACTCAT 002000
002001 GGGCTGTGTC ATGAATTTCT AGTCTCCAAT GGGTAGTTAG ATGGTAGATG TTAACAGTTA CATGGATAAC CTAGTCTTCT 002080
002081 GTTCTTCTGT CAATTGTTGA GCAAACCATT GGGATATAAT TGCTACAAGT TTAGGTTCCT G
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Predicted Small Protein

Name NONHSAT053371_smProtein_959:1177
Length 73
Molecular weight 8596.5477
Aromaticity 0.194444444444
Instability index 45.0791666667
Isoelectric point 9.26971435547
Runs 14
Runs residual 0.0535279805353
Runs probability 0.0457390163272
Amino acid sequence MFLLSLSFQYGYIRIFGSVSMWIHTCMIYKYCLLILFIPKPSRIWRLHFLSCMICIFFPS
VSICFLQSKPCL
Secondary structure LEEEEEEELLLEEEEEELHHHHHHHHHHHHHHHHHHLLLLLLLLEEHHHHLLEEEEELLL
LEEEEEEELLLL
PRMN LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHH
HHLLLLLLLLLL
PiMo oooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiTTTTTTTTTTTTTTTTT
TToooooooooo