Difference between revisions of "NONHSAT091497"
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sequence = <dnaseq>TTTGCTCGTACCAGCAGGTGTGCACTGCCGCGTCAATCTCCAACAAAGCCGGAAAAGCAGCCTGGCGCATGTGCAAAGGAAGTCCCTCCTACCACTACCGAGCCGAGATGACCAATGGGAGACGGCCATCTGCGCCTGCGCAAAAAAGTCGCCAATGTTCATTTCCGGTCTTTTTCGCCCCGCCCTTCAAATGCGAAAGCGACTGCCTTCTTGGAATAAAATACTTGGTCAGTGGAATCTCTTCAACAAAATAGAAGAGAAGCAGTCATGGAGTGAAGAAATAAATCATCTTTGTTTCTACTCATCTGTCACTTATGCAATACATACAATATGTAAAAAGGAAAAATCCCTGTGTAATAGCCTAAGGCAACCAGCAGCTTCCACGTCGGTTGGATATTAATAAATTTTTTTCTTTACTGTAAAATATACCCATCAGCttttttttttttttttttttttgagatggagtcttgcactgtcacccaggctggagtgcagtggcgcaatctccacccactgcaagctctgcctcctgggttcacaccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacacccggctagttttttgtacttttagtagagacgaggtttcaccatattagccaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcacccggccACTAGCTTTTCTAAGACACTTTGTTTGTTTTTAAATACCAGACCTCTGCTATGACAATGTTTGATTTTGTAAACTTCAGGTCAAATCATGTCTTCTGAAAAGTAACTGCATATAAAACACGTTGAGACATTTGCTTAAGATGTTGATCCTGGTTTCAAGTAACAGCATAAGGGAATTCCTTTGA</dnaseq>| | sequence = <dnaseq>TTTGCTCGTACCAGCAGGTGTGCACTGCCGCGTCAATCTCCAACAAAGCCGGAAAAGCAGCCTGGCGCATGTGCAAAGGAAGTCCCTCCTACCACTACCGAGCCGAGATGACCAATGGGAGACGGCCATCTGCGCCTGCGCAAAAAAGTCGCCAATGTTCATTTCCGGTCTTTTTCGCCCCGCCCTTCAAATGCGAAAGCGACTGCCTTCTTGGAATAAAATACTTGGTCAGTGGAATCTCTTCAACAAAATAGAAGAGAAGCAGTCATGGAGTGAAGAAATAAATCATCTTTGTTTCTACTCATCTGTCACTTATGCAATACATACAATATGTAAAAAGGAAAAATCCCTGTGTAATAGCCTAAGGCAACCAGCAGCTTCCACGTCGGTTGGATATTAATAAATTTTTTTCTTTACTGTAAAATATACCCATCAGCttttttttttttttttttttttgagatggagtcttgcactgtcacccaggctggagtgcagtggcgcaatctccacccactgcaagctctgcctcctgggttcacaccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacacccggctagttttttgtacttttagtagagacgaggtttcaccatattagccaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcacccggccACTAGCTTTTCTAAGACACTTTGTTTGTTTTTAAATACCAGACCTCTGCTATGACAATGTTTGATTTTGTAAACTTCAGGTCAAATCATGTCTTCTGAAAAGTAACTGCATATAAAACACGTTGAGACATTTGCTTAAGATGTTGATCCTGGTTTCAAGTAACAGCATAAGGGAATTCCTTTGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:NONHSAG035896]] | + | [[Category:Antisense]][[Category:NONHSAG035896]][[Category:Transcripts]] |
Latest revision as of 00:39, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT091497 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
924 nt |
| Genomic location |
chr3+:122134884..122140747 |
| Exon number |
2 |
| Exons |
122134884..122135097,122140038..122140747 |
| Genome context |
|
| Sequence |
000001 TTTGCTCGTA CCAGCAGGTG TGCACTGCCG CGTCAATCTC CAACAAAGCC GGAAAAGCAG CCTGGCGCAT GTGCAAAGGA 000080
000081 AGTCCCTCCT ACCACTACCG AGCCGAGATG ACCAATGGGA GACGGCCATC TGCGCCTGCG CAAAAAAGTC GCCAATGTTC 000160 000161 ATTTCCGGTC TTTTTCGCCC CGCCCTTCAA ATGCGAAAGC GACTGCCTTC TTGGAATAAA ATACTTGGTC AGTGGAATCT 000240 000241 CTTCAACAAA ATAGAAGAGA AGCAGTCATG GAGTGAAGAA ATAAATCATC TTTGTTTCTA CTCATCTGTC ACTTATGCAA 000320 000321 TACATACAAT ATGTAAAAAG GAAAAATCCC TGTGTAATAG CCTAAGGCAA CCAGCAGCTT CCACGTCGGT TGGATATTAA 000400 000401 TAAATTTTTT TCTTTACTGT AAAATATACC CATCAGCttt tttttttttt tttttttttg agatggagtc ttgcactgtc 000480 000481 acccaggctg gagtgcagtg gcgcaatctc cacccactgc aagctctgcc tcctgggttc acaccattct cctgcctcag 000560 000561 cctcccaagt agctgggact acaggcgccc gccaccacac ccggctagtt ttttgtactt ttagtagaga cgaggtttca 000640 000641 ccatattagc caggatggtc tcgatctcct gacctcgtga tccacctgcc tcggcctccc aaagtgctgg gattacaggc 000720 000721 atgagccacc gcacccggcc ACTAGCTTTT CTAAGACACT TTGTTTGTTT TTAAATACCA GACCTCTGCT ATGACAATGT 000800 000801 TTGATTTTGT AAACTTCAGG TCAAATCATG TCTTCTGAAA AGTAACTGCA TATAAAACAC GTTGAGACAT TTGCTTAAGA 000880 000881 TGTTGATCCT GGTTTCAAGT AACAGCATAA GGGAATTCCT TTGA |
Predicted Small Protein
| Name | NONHSAT091497_smProtein_68:253 |
| Length | 62 |
| Molecular weight | 6762.7752 |
| Aromaticity | 0.114754098361 |
| Instability index | 65.5770491803 |
| Isoelectric point | 9.50592041016 |
| Runs | 9 |
| Runs residual | 0.00527605049934 |
| Runs probability | 0.0200789024319 |
| Amino acid sequence | MCKGSPSYHYRAEMTNGRRPSAPAQKSRQCSFPVFFAPPFKCESDCLLGIKYLVSGISST K |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLHHHLLLEEEEELEELL L |
| PRMN | - |
| PiMo | - |
