Difference between revisions of "NONHSAT125819"

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sequence = <dnaseq>GGCTCGGCTTCCTGAGTCAGCACACTCTCCTCTCCATGGAGCAGATGGGCCAACCCTCCGGGAAAGGAAGCTCTTCTAAGATCCTCCTGTCTTCATTCGTCCCAAATGGGCTTTGCTATAAAAAGCAAATTAAACAGCCATTGTTCCTTTTCTCCATGAGGCTGGCATGCTAACATCCTGCCTAATACCAAAGCTCCCGGATGTTTGTTGCTGGCCTGGGGACGCCTGCCACCGCTTACAGCAATAAGAAAAAACATGCCTTCCACTTGGGAACAGAATCTCTCTTAAGTTCCAGGCCTTTCTTTTTCATCATGTCCCTCCCCCCTTTTTTTAACGTTATGACATATAGTACACAGCAGAAAAGGGCTTTCTTGTTAGCTCCAGCATTCTTCTCCGTGCCTGGCGAAGTACTCCCACGGCCTTACAAATAGGCTTAGGCGTCTAATCACAAGAGATCCTGAAGGCCTGG</dnaseq>|
 
sequence = <dnaseq>GGCTCGGCTTCCTGAGTCAGCACACTCTCCTCTCCATGGAGCAGATGGGCCAACCCTCCGGGAAAGGAAGCTCTTCTAAGATCCTCCTGTCTTCATTCGTCCCAAATGGGCTTTGCTATAAAAAGCAAATTAAACAGCCATTGTTCCTTTTCTCCATGAGGCTGGCATGCTAACATCCTGCCTAATACCAAAGCTCCCGGATGTTTGTTGCTGGCCTGGGGACGCCTGCCACCGCTTACAGCAATAAGAAAAAACATGCCTTCCACTTGGGAACAGAATCTCTCTTAAGTTCCAGGCCTTTCTTTTTCATCATGTCCCTCCCCCCTTTTTTTAACGTTATGACATATAGTACACAGCAGAAAAGGGCTTTCTTGTTAGCTCCAGCATTCTTCTCCGTGCCTGGCGAAGTACTCCCACGGCCTTACAAATAGGCTTAGGCGTCTAATCACAAGAGATCCTGAAGGCCTGG</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG049881]]
+
[[Category:Intergenic]][[Category:NONHSAG049881]][[Category:Transcripts]]

Latest revision as of 06:56, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT125819

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

469 nt

Genomic location

chr8-:29379949..29380417

Exon number

1

Exons

29379949..29380417

Genome context

Sequence
000001 GGCTCGGCTT CCTGAGTCAG CACACTCTCC TCTCCATGGA GCAGATGGGC CAACCCTCCG GGAAAGGAAG CTCTTCTAAG 000080
000081 ATCCTCCTGT CTTCATTCGT CCCAAATGGG CTTTGCTATA AAAAGCAAAT TAAACAGCCA TTGTTCCTTT TCTCCATGAG 000160
000161 GCTGGCATGC TAACATCCTG CCTAATACCA AAGCTCCCGG ATGTTTGTTG CTGGCCTGGG GACGCCTGCC ACCGCTTACA 000240
000241 GCAATAAGAA AAAACATGCC TTCCACTTGG GAACAGAATC TCTCTTAAGT TCCAGGCCTT TCTTTTTCAT CATGTCCCTC 000320
000321 CCCCCTTTTT TTAACGTTAT GACATATAGT ACACAGCAGA AAAGGGCTTT CTTGTTAGCT CCAGCATTCT TCTCCGTGCC 000400
000401 TGGCGAAGTA CTCCCACGGC CTTACAAATA GGCTTAGGCG TCTAATCACA AGAGATCCTG AAGGCCTGG
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Predicted Small Protein

Name NONHSAT125819_smProtein_200:430
Length 77
Molecular weight 8531.9248
Aromaticity 0.171052631579
Instability index 58.0131578947
Isoelectric point 10.2109985352
Runs 13
Runs residual 0.0296430732002
Runs probability 0.0320410908646
Amino acid sequence MFVAGLGTPATAYSNKKKHAFHLGTESLLSSRPFFFIMSLPPFFNVMTYSTQQKRAFLLA
PAFFSVPGEVLPRPYK
Secondary structure LEELLLLLLLLLLLLLLLLEEELLLLEEELLLLEEEEEELLLLEEEEELLHHHHHHHHHL
LLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL
LLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii
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