Difference between revisions of "Lnc-SNAI1-1:1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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==Annotated Information== | ==Annotated Information== | ||
| + | ===Name=== | ||
| + | LOC100887755 | ||
| + | |||
| + | ===Characteristics=== | ||
| + | Two exon, 600 nt transcript | ||
| + | |||
| + | Around 50 kb 3’ from SNAI1 on the opposite strand. | ||
| + | |||
| + | In-vitro translation showed no sign of protein product. | ||
| + | |||
| + | ===Function=== | ||
| + | LncRNA regulates gene expression through SNAI1 dependant and independent mechanisms. | ||
| + | |||
| + | Stimulates SNAI1 gene expression (in A549 cells) and like SNAI1 is required for cell migration. | ||
| + | |||
| + | Stimulates Aurora-kinase A (AURKA) expression, a gene found ~6 megabases from LOC100887755 on chr20. SNAI1 does not appear to regulate AURKA and so LOC100887755 appears to regulate AURKA by a SNAI1 independent mechanism. | ||
| + | |||
| + | ===Expression=== | ||
| + | Expressed in A549 cells. | ||
| + | |||
| + | ===Conservation=== | ||
| + | Please input conservation information here. | ||
| + | |||
| + | ===Misc=== | ||
| + | Please input misc information here. | ||
| + | |||
===Transcriptomic Nomeclature=== | ===Transcriptomic Nomeclature=== | ||
Please input transcriptomic nomeclature information here. | Please input transcriptomic nomeclature information here. | ||
| − | |||
| − | |||
| − | |||
===Regulation=== | ===Regulation=== | ||
Please input regulation information here. | Please input regulation information here. | ||
| − | |||
| − | |||
| − | |||
===Allelic Information and Variation=== | ===Allelic Information and Variation=== | ||
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==References== | ==References== | ||
| − | + | [http://www.lncrnadb.org/LOC100887755/ Annotation originally sourced from lncRNAdb.] | |
{{basic| | {{basic| | ||
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sequence = <dnaseq>CCGTTCCTGCCTCCCACAGACACCTATTAAGTGCCTCCAGTTTTAGGAACTGGGTATAGATATGGCTGGGAACAAAATGGAAGAAAACAAAAACAAAAATCCCTGCCCTCATGGTGCTGACTCTCCTGTGGCAGAGACGGAGAAGATGAACAGGGATTTTATACCAGGCGTCAGAAGGGAACCAGTGCTAAAGAAAATGAAAACACCAGGCCGGGAGAGGCAGCTGGCATGCGGGCCGTGGTGGTTTTACGTGGCCGATTTGAGAGAGTGAGACCCCTGGGGTCTTGGAGCCAGGCCTGGGAAAAGCTACTTCACGTCAGGCCAGGGGCTGTAGCCCTGGCAACCTCCACTCCGCCTGGAAATCCTCCACCTCGGGGCCTCTCTTTGCCCAGACCTGGCCCAGGAGGAGCACATGGGAGCCGGGACCTTCCCAACAATCCTTGCCGTTGGCTCCACAAACCTCAGCCAGTCCTGCAACCTGGGATGCCTTTTCCACCAGGATGCCTGCTACTGTCACTGTTGTCATTAGATAATTAATGAACTATAATTAGAAATCATATCAATAAAATTTCACAGTCTAAGGCTGTTGAAATAGGAAAA</dnaseq>| | sequence = <dnaseq>CCGTTCCTGCCTCCCACAGACACCTATTAAGTGCCTCCAGTTTTAGGAACTGGGTATAGATATGGCTGGGAACAAAATGGAAGAAAACAAAAACAAAAATCCCTGCCCTCATGGTGCTGACTCTCCTGTGGCAGAGACGGAGAAGATGAACAGGGATTTTATACCAGGCGTCAGAAGGGAACCAGTGCTAAAGAAAATGAAAACACCAGGCCGGGAGAGGCAGCTGGCATGCGGGCCGTGGTGGTTTTACGTGGCCGATTTGAGAGAGTGAGACCCCTGGGGTCTTGGAGCCAGGCCTGGGAAAAGCTACTTCACGTCAGGCCAGGGGCTGTAGCCCTGGCAACCTCCACTCCGCCTGGAAATCCTCCACCTCGGGGCCTCTCTTTGCCCAGACCTGGCCCAGGAGGAGCACATGGGAGCCGGGACCTTCCCAACAATCCTTGCCGTTGGCTCCACAAACCTCAGCCAGTCCTGCAACCTGGGATGCCTTTTCCACCAGGATGCCTGCTACTGTCACTGTTGTCATTAGATAATTAATGAACTATAATTAGAAATCATATCAATAAAATTTCACAGTCTAAGGCTGTTGAAATAGGAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:Transcripts]] |
Latest revision as of 03:19, 26 August 2015
Please input one-sentence summary here.
Contents
Annotated Information
Name
LOC100887755
Characteristics
Two exon, 600 nt transcript
Around 50 kb 3’ from SNAI1 on the opposite strand.
In-vitro translation showed no sign of protein product.
Function
LncRNA regulates gene expression through SNAI1 dependant and independent mechanisms.
Stimulates SNAI1 gene expression (in A549 cells) and like SNAI1 is required for cell migration.
Stimulates Aurora-kinase A (AURKA) expression, a gene found ~6 megabases from LOC100887755 on chr20. SNAI1 does not appear to regulate AURKA and so LOC100887755 appears to regulate AURKA by a SNAI1 independent mechanism.
Expression
Expressed in A549 cells.
Conservation
Please input conservation information here.
Misc
Please input misc information here.
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Annotation originally sourced from lncRNAdb.
Basic Information
| Transcript ID |
lnc-SNAI1-1:1 |
| Source |
LNCipedia2.1 |
| Same with |
, |
| Classification |
intergenic |
| Length |
600 nt |
| Genomic location |
chr20+:48657243..48658166 |
| Exon number |
, |
| Exons |
, |
| Genome context |
|
| Sequence |
000001 CCGTTCCTGC CTCCCACAGA CACCTATTAA GTGCCTCCAG TTTTAGGAAC TGGGTATAGA TATGGCTGGG AACAAAATGG 000080
000081 AAGAAAACAA AAACAAAAAT CCCTGCCCTC ATGGTGCTGA CTCTCCTGTG GCAGAGACGG AGAAGATGAA CAGGGATTTT 000160 000161 ATACCAGGCG TCAGAAGGGA ACCAGTGCTA AAGAAAATGA AAACACCAGG CCGGGAGAGG CAGCTGGCAT GCGGGCCGTG 000240 000241 GTGGTTTTAC GTGGCCGATT TGAGAGAGTG AGACCCCTGG GGTCTTGGAG CCAGGCCTGG GAAAAGCTAC TTCACGTCAG 000320 000321 GCCAGGGGCT GTAGCCCTGG CAACCTCCAC TCCGCCTGGA AATCCTCCAC CTCGGGGCCT CTCTTTGCCC AGACCTGGCC 000400 000401 CAGGAGGAGC ACATGGGAGC CGGGACCTTC CCAACAATCC TTGCCGTTGG CTCCACAAAC CTCAGCCAGT CCTGCAACCT 000480 000481 GGGATGCCTT TTCCACCAGG ATGCCTGCTA CTGTCACTGT TGTCATTAGA TAATTAATGA ACTATAATTA GAAATCATAT 000560 000561 CAATAAAATT TCACAGTCTA AGGCTGTTGA AATAGGAAAA |
