Difference between revisions of "ELFN1-AS1"
Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== ELFN1-AS1 ===Approved Name=== ELFN1 antisense RNA 1 ===Previous Symbols=== _ ===Synonyms=== _ ===Chromosome=== 7p22.3 ===RefSeq...") |
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==Annotated Information== | ==Annotated Information== | ||
===Approved Symbol=== | ===Approved Symbol=== | ||
| − | ELFN1-AS1 | + | ELFN1-AS1 (ELFN1 antisense RNA 1) |
| − | |||
| − | ELFN1 antisense RNA 1 | ||
| − | |||
| − | |||
| − | |||
| − | |||
===Chromosome=== | ===Chromosome=== | ||
7p22.3 | 7p22.3 | ||
===RefSeq ID=== | ===RefSeq ID=== | ||
NR_120510 | NR_120510 | ||
| − | |||
| − | |||
===Ensembl ID=== | ===Ensembl ID=== | ||
ENSG00000236081 | ENSG00000236081 | ||
| − | === | + | ===Characteristics=== |
| − | + | ELFN1-AS1 has its own promoter and it is a subject of a complex regulation by various TFs, c-Myc/Max and E2F family proteins in particular.<ref name="ref1" /> | |
| + | |||
| + | ===Function=== | ||
| + | ELFN1-AS1 is translated and functions as a protein.<ref name="ref1" /> | ||
| + | |||
| + | ===Expression=== | ||
| + | ELFN1-AS1 is abundant in tumors, but seems to be weak and specific to liver, heart, and stomach<ref name="ref1" /> | ||
| + | |||
| + | ==Labs working on this lncRNA== | ||
| + | * Biomedical Center, 8 Vyborgskaja Street, Saint Petersburg 194044, Russia ; Department of Genetics and Breeding, Saint Petersburg State University, 7/9 Universitetskaya Embankment, Saint Petersburg 199034, Russia. | ||
| + | * Biomedical Center, 8 Vyborgskaja Street, Saint Petersburg 194044, Russia. | ||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1"> 1: Polev DE, Karnaukhova IK, Krukovskaya LL, Kozlov AP. ELFN1-AS1: a novel | ||
| + | primate gene with possible microRNA function expressed predominantly in human | ||
| + | tumors. Biomed Res Int. 2014;2014:398097. doi: 10.1155/2014/398097. | ||
| + | </ref>(1) | ||
| + | </references> | ||
| + | |||
===Sequence=== | ===Sequence=== | ||
>gi|641386973|ref|NR_120510.1| Homo sapiens ELFN1 antisense RNA 1 (ELFN1-AS1), transcript variant 3, long non-coding RNA | >gi|641386973|ref|NR_120510.1| Homo sapiens ELFN1 antisense RNA 1 (ELFN1-AS1), transcript variant 3, long non-coding RNA | ||
<dnaseq>GGGTCTGGCCAGCGGCCGCACAGGAAGCGTGTAGGAAGCGTGGCGCCTCAGCCACAATCGTAATCACCTTTAATCTCTTGCTCAAAATAACCCAAAGTCAAGCCAGAGGGAGCCTCGCTAACCACCAAGGCGGTCCTGCGGCCCCGCGCAGCCCTGAGGGCGTCCAGTCCTCCACGCGTGGAGGAGAATCCGGCCTCCAGACACAATCTCCAGGGCCCACTGGATGGGCCTCCGCTCCTTCTCACTCCCAGTCCTCTGGTGCATGCCCCCTTCCTGGCTGAAGAACCTGCACCAGCCGCCCCTCCGCCTGGGAAGCTCCCTCCTGTCATTCACTCCGAGACGCAGCAGCGTTGCCCCAAGAGCCCTCCCTGCTCTGCACCCCGAATTCACTCTCAGCCCCCACCTAGTTTAAATCCTGGCCCTTCTCTCTCCCTGATGTTCTGCTTGGTTATTTACTTTTAATTCATGTTGGAGCTCCTCCTGCCACTGCAAGAGCAGGAGCTGTGTGTCCTGGTCACTGCTGTGGCATCCCAGGGCCGGCGCGGTGCCCAGCAGCCAGGACTGGACAGACTCGGGCCACGCTGCGCACGGGCTGGGATGCGCTGGCTCTGCTTCCTCTTCCGTTGAATGGGAGTAAAGACCACTCCTCCCAGGGAGCTTGTGGTTTCTCACAAA</dnaseq> | <dnaseq>GGGTCTGGCCAGCGGCCGCACAGGAAGCGTGTAGGAAGCGTGGCGCCTCAGCCACAATCGTAATCACCTTTAATCTCTTGCTCAAAATAACCCAAAGTCAAGCCAGAGGGAGCCTCGCTAACCACCAAGGCGGTCCTGCGGCCCCGCGCAGCCCTGAGGGCGTCCAGTCCTCCACGCGTGGAGGAGAATCCGGCCTCCAGACACAATCTCCAGGGCCCACTGGATGGGCCTCCGCTCCTTCTCACTCCCAGTCCTCTGGTGCATGCCCCCTTCCTGGCTGAAGAACCTGCACCAGCCGCCCCTCCGCCTGGGAAGCTCCCTCCTGTCATTCACTCCGAGACGCAGCAGCGTTGCCCCAAGAGCCCTCCCTGCTCTGCACCCCGAATTCACTCTCAGCCCCCACCTAGTTTAAATCCTGGCCCTTCTCTCTCCCTGATGTTCTGCTTGGTTATTTACTTTTAATTCATGTTGGAGCTCCTCCTGCCACTGCAAGAGCAGGAGCTGTGTGTCCTGGTCACTGCTGTGGCATCCCAGGGCCGGCGCGGTGCCCAGCAGCCAGGACTGGACAGACTCGGGCCACGCTGCGCACGGGCTGGGATGCGCTGGCTCTGCTTCCTCTTCCGTTGAATGGGAGTAAAGACCACTCCTCCCAGGGAGCTTGTGGTTTCTCACAAA</dnaseq> | ||
Revision as of 15:05, 1 December 2017
Contents
Annotated Information
Approved Symbol
ELFN1-AS1 (ELFN1 antisense RNA 1)
Chromosome
7p22.3
RefSeq ID
NR_120510
Ensembl ID
ENSG00000236081
Characteristics
ELFN1-AS1 has its own promoter and it is a subject of a complex regulation by various TFs, c-Myc/Max and E2F family proteins in particular.[1]
Function
ELFN1-AS1 is translated and functions as a protein.[1]
Expression
ELFN1-AS1 is abundant in tumors, but seems to be weak and specific to liver, heart, and stomach[1]
Labs working on this lncRNA
- Biomedical Center, 8 Vyborgskaja Street, Saint Petersburg 194044, Russia ; Department of Genetics and Breeding, Saint Petersburg State University, 7/9 Universitetskaya Embankment, Saint Petersburg 199034, Russia.
- Biomedical Center, 8 Vyborgskaja Street, Saint Petersburg 194044, Russia.
References
Sequence
>gi|641386973|ref|NR_120510.1| Homo sapiens ELFN1 antisense RNA 1 (ELFN1-AS1), transcript variant 3, long non-coding RNA
000001 GGGTCTGGCC AGCGGCCGCA CAGGAAGCGT GTAGGAAGCG TGGCGCCTCA GCCACAATCG TAATCACCTT TAATCTCTTG 000080
000081 CTCAAAATAA CCCAAAGTCA AGCCAGAGGG AGCCTCGCTA ACCACCAAGG CGGTCCTGCG GCCCCGCGCA GCCCTGAGGG 000160
000161 CGTCCAGTCC TCCACGCGTG GAGGAGAATC CGGCCTCCAG ACACAATCTC CAGGGCCCAC TGGATGGGCC TCCGCTCCTT 000240
000241 CTCACTCCCA GTCCTCTGGT GCATGCCCCC TTCCTGGCTG AAGAACCTGC ACCAGCCGCC CCTCCGCCTG GGAAGCTCCC 000320
000321 TCCTGTCATT CACTCCGAGA CGCAGCAGCG TTGCCCCAAG AGCCCTCCCT GCTCTGCACC CCGAATTCAC TCTCAGCCCC 000400
000401 CACCTAGTTT AAATCCTGGC CCTTCTCTCT CCCTGATGTT CTGCTTGGTT ATTTACTTTT AATTCATGTT GGAGCTCCTC 000480
000481 CTGCCACTGC AAGAGCAGGA GCTGTGTGTC CTGGTCACTG CTGTGGCATC CCAGGGCCGG CGCGGTGCCC AGCAGCCAGG 000560
000561 ACTGGACAGA CTCGGGCCAC GCTGCGCACG GGCTGGGATG CGCTGGCTCT GCTTCCTCTT CCGTTGAATG GGAGTAAAGA 000640
000641 CCACTCCTCC CAGGGAGCTT GTGGTTTCTC ACAAA
000081 CTCAAAATAA CCCAAAGTCA AGCCAGAGGG AGCCTCGCTA ACCACCAAGG CGGTCCTGCG GCCCCGCGCA GCCCTGAGGG 000160
000161 CGTCCAGTCC TCCACGCGTG GAGGAGAATC CGGCCTCCAG ACACAATCTC CAGGGCCCAC TGGATGGGCC TCCGCTCCTT 000240
000241 CTCACTCCCA GTCCTCTGGT GCATGCCCCC TTCCTGGCTG AAGAACCTGC ACCAGCCGCC CCTCCGCCTG GGAAGCTCCC 000320
000321 TCCTGTCATT CACTCCGAGA CGCAGCAGCG TTGCCCCAAG AGCCCTCCCT GCTCTGCACC CCGAATTCAC TCTCAGCCCC 000400
000401 CACCTAGTTT AAATCCTGGC CCTTCTCTCT CCCTGATGTT CTGCTTGGTT ATTTACTTTT AATTCATGTT GGAGCTCCTC 000480
000481 CTGCCACTGC AAGAGCAGGA GCTGTGTGTC CTGGTCACTG CTGTGGCATC CCAGGGCCGG CGCGGTGCCC AGCAGCCAGG 000560
000561 ACTGGACAGA CTCGGGCCAC GCTGCGCACG GGCTGGGATG CGCTGGCTCT GCTTCCTCTT CCGTTGAATG GGAGTAAAGA 000640
000641 CCACTCCTCC CAGGGAGCTT GTGGTTTCTC ACAAA
