Difference between revisions of "NONHSAT141047"

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sequence = <dnaseq>GCTGAGTTGCTTGGAGGAGCTTGGAGAAACCAGAAGTGAGATCCAGGAGAAGTAAGGCCCTGGAGTGCCAGGAGCCCTTCTCCCAAAGATGGAGAAATAAATGAAGAAATACAGGAAAATAAGCATTGGGTGTTTTGCAATGGCTACACAAACTAGTCATGTCTTCCATGGTCAAGAAAATATGTTTCTGGAAAACCATTGAGGCTGCAGGGGAGTGAGACCCAGTCTTCAGATTGGGAGGACTCTGAAGACTGGCTTTCGGCTCACAGTTTAAAATGTCAGAAACTCACCTTGGCTGACCTGATAAGCCAGGGCACAGAAGTGCTGTAAGTCTGAAGCTGTTCCCCGCACCCCCCACAGCTGCAGTGACACATGCAACCCCCTGGGCCCGAGAGATCCCCTCATAAGGCTTTGCTTCTTCAGGGAGGAGGGCACCAATGTCGTGCAGAAAATATGTTTCTCCACCCAGATCATCCGCCATTTTGAGTCAAAGCTTTCTGACACTATTGAAGTCTATCAAGAGAGAATTCAGTGGCTCACAGAAAACAGCAAGAAGAGCCTCATCGATGAGCAGCTGAGCC</dnaseq>|
 
sequence = <dnaseq>GCTGAGTTGCTTGGAGGAGCTTGGAGAAACCAGAAGTGAGATCCAGGAGAAGTAAGGCCCTGGAGTGCCAGGAGCCCTTCTCCCAAAGATGGAGAAATAAATGAAGAAATACAGGAAAATAAGCATTGGGTGTTTTGCAATGGCTACACAAACTAGTCATGTCTTCCATGGTCAAGAAAATATGTTTCTGGAAAACCATTGAGGCTGCAGGGGAGTGAGACCCAGTCTTCAGATTGGGAGGACTCTGAAGACTGGCTTTCGGCTCACAGTTTAAAATGTCAGAAACTCACCTTGGCTGACCTGATAAGCCAGGGCACAGAAGTGCTGTAAGTCTGAAGCTGTTCCCCGCACCCCCCACAGCTGCAGTGACACATGCAACCCCCTGGGCCCGAGAGATCCCCTCATAAGGCTTTGCTTCTTCAGGGAGGAGGGCACCAATGTCGTGCAGAAAATATGTTTCTCCACCCAGATCATCCGCCATTTTGAGTCAAAGCTTTCTGACACTATTGAAGTCTATCAAGAGAGAATTCAGTGGCTCACAGAAAACAGCAAGAAGAGCCTCATCGATGAGCAGCTGAGCC</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG018861]]

Revision as of 06:31, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT141047

Source

NONCODE4.0

Same with

,

Classification

sense

Length

581 nt

Genomic location

chr16+:22103859..22122233

Exon number

5

Exons

22103859..22103972,22108180..22108266,22111515..22111814,22114796..22114850,22122209..22122233

Genome context

Sequence
000001 GCTGAGTTGC TTGGAGGAGC TTGGAGAAAC CAGAAGTGAG ATCCAGGAGA AGTAAGGCCC TGGAGTGCCA GGAGCCCTTC 000080
000081 TCCCAAAGAT GGAGAAATAA ATGAAGAAAT ACAGGAAAAT AAGCATTGGG TGTTTTGCAA TGGCTACACA AACTAGTCAT 000160
000161 GTCTTCCATG GTCAAGAAAA TATGTTTCTG GAAAACCATT GAGGCTGCAG GGGAGTGAGA CCCAGTCTTC AGATTGGGAG 000240
000241 GACTCTGAAG ACTGGCTTTC GGCTCACAGT TTAAAATGTC AGAAACTCAC CTTGGCTGAC CTGATAAGCC AGGGCACAGA 000320
000321 AGTGCTGTAA GTCTGAAGCT GTTCCCCGCA CCCCCCACAG CTGCAGTGAC ACATGCAACC CCCTGGGCCC GAGAGATCCC 000400
000401 CTCATAAGGC TTTGCTTCTT CAGGGAGGAG GGCACCAATG TCGTGCAGAA AATATGTTTC TCCACCCAGA TCATCCGCCA 000480
000481 TTTTGAGTCA AAGCTTTCTG ACACTATTGA AGTCTATCAA GAGAGAATTC AGTGGCTCAC AGAAAACAGC AAGAAGAGCC 000560
000561 TCATCGATGA GCAGCTGAGC C
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Predicted Small Protein

Name NONHSAT141047_smProtein_437:577
Length 47
Molecular weight 5096.8658
Aromaticity 0.0652173913043
Instability index 108.147826087
Isoelectric point 11.481628418
Runs 7
Runs residual 0.00918737060041
Runs probability 0.020163020163
Amino acid sequence MSCRKYVSPPRSSAILSQSFLTLLKSIKREFSGSQKTARRASSMSS
Secondary structure LLLEEELLLLLLHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHLLLL
PRMN -
PiMo -