Difference between revisions of "NONHSAT022391"
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sequence = <dnaseq>CAGCCATCTCCCCTGAGGAGTACTTCGACCCCAACTTCAGCCTGGAGTCACGGAACATTGGCCGCCCCATCGAGATGTCCAGCAAAGTACAGAGGTGAGGTCTGAGAGCTGGCTGGGGACTTGCCTCGGGACAAGGGCTCTTGCAGACCCCTCTCTGGGCCTGTCATAGTTAGGGACCCACTCCCTCGGctggcttctctctggactccactcctggagggcaggagtcatgtctgccttatccatggtcctcagcccttagcaaggggcttggcacagaaaaccggtagtttgtctttgatgaatggatgGTGCCACCCATGTATGGTTTTCTATTGAATTTCATGAGTACCTGCTGGGGCCAGCGTGGCACAGTGGGAAGGGCCCCCAGCGACGTGGCCTGGGAGTGGAGCGTCTGCCTTGGTGGAACAGAACAGTTACGCTCTTGCCTCGTGAGGAGCCTTGAGCAGGTTCAAGGCAACACTGTGGCTGAGTGAAGAGCACCCGCTCTCCCTGGGTGACCAGGTGACCCCCATCATCGACCTAATGGCCATCAGCAACGCTCACTTTGCCAAGCTGCGCGACTTCATCACTCTGCGCCTTCCACCT</dnaseq>| | sequence = <dnaseq>CAGCCATCTCCCCTGAGGAGTACTTCGACCCCAACTTCAGCCTGGAGTCACGGAACATTGGCCGCCCCATCGAGATGTCCAGCAAAGTACAGAGGTGAGGTCTGAGAGCTGGCTGGGGACTTGCCTCGGGACAAGGGCTCTTGCAGACCCCTCTCTGGGCCTGTCATAGTTAGGGACCCACTCCCTCGGctggcttctctctggactccactcctggagggcaggagtcatgtctgccttatccatggtcctcagcccttagcaaggggcttggcacagaaaaccggtagtttgtctttgatgaatggatgGTGCCACCCATGTATGGTTTTCTATTGAATTTCATGAGTACCTGCTGGGGCCAGCGTGGCACAGTGGGAAGGGCCCCCAGCGACGTGGCCTGGGAGTGGAGCGTCTGCCTTGGTGGAACAGAACAGTTACGCTCTTGCCTCGTGAGGAGCCTTGAGCAGGTTCAAGGCAACACTGTGGCTGAGTGAAGAGCACCCGCTCTCCCTGGGTGACCAGGTGACCCCCATCATCGACCTAATGGCCATCAGCAACGCTCACTTTGCCAAGCTGCGCGACTTCATCACTCTGCGCCTTCCACCT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG008788]] | + | [[Category:Sense]][[Category:NONHSAG008788]][[Category:Transcripts]] |
Latest revision as of 20:37, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT022391 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
609 nt |
| Genomic location |
chr11+:67067501..67068599 |
| Exon number |
2 |
| Exons |
67067501..67067970,67068461..67068599 |
| Genome context |
|
| Sequence |
000001 CAGCCATCTC CCCTGAGGAG TACTTCGACC CCAACTTCAG CCTGGAGTCA CGGAACATTG GCCGCCCCAT CGAGATGTCC 000080
000081 AGCAAAGTAC AGAGGTGAGG TCTGAGAGCT GGCTGGGGAC TTGCCTCGGG ACAAGGGCTC TTGCAGACCC CTCTCTGGGC 000160 000161 CTGTCATAGT TAGGGACCCA CTCCCTCGGc tggcttctct ctggactcca ctcctggagg gcaggagtca tgtctgcctt 000240 000241 atccatggtc ctcagccctt agcaaggggc ttggcacaga aaaccggtag tttgtctttg atgaatggat gGTGCCACCC 000320 000321 ATGTATGGTT TTCTATTGAA TTTCATGAGT ACCTGCTGGG GCCAGCGTGG CACAGTGGGA AGGGCCCCCA GCGACGTGGC 000400 000401 CTGGGAGTGG AGCGTCTGCC TTGGTGGAAC AGAACAGTTA CGCTCTTGCC TCGTGAGGAG CCTTGAGCAG GTTCAAGGCA 000480 000481 ACACTGTGGC TGAGTGAAGA GCACCCGCTC TCCCTGGGTG ACCAGGTGAC CCCCATCATC GACCTAATGG CCATCAGCAA 000560 000561 CGCTCACTTT GCCAAGCTGC GCGACTTCAT CACTCTGCGC CTTCCACCT |
Predicted Small Protein
| Name | NONHSAT022391_smProtein_308:496 |
| Length | 63 |
| Molecular weight | 6850.7938 |
| Aromaticity | 0.0967741935484 |
| Instability index | 58.5129032258 |
| Isoelectric point | 5.15484619141 |
| Runs | 11 |
| Runs residual | 0.0237788018433 |
| Runs probability | 0.0397054808819 |
| Amino acid sequence | MVPPMYGFLLNFMSTCWGQRGTVGRAPSDVAWEWSVCLGGTEQLRSCLVRSLEQVQGNTV AE |
| Secondary structure | LLLLLLHHHHHHHHLLLLLLLEEEELLLLEEEEEEEELLLLHHHHHHHHHHHHHHLLLEE LL |
| PRMN | - |
| PiMo | - |
