Difference between revisions of "NONHSAT026223"
| Line 42: | Line 42: | ||
sequence = <dnaseq>ATGTCCTTAAGTCACAGttaattcatttaatgcacactttaagtgtctactgtcaggcactgtcctagatgtgggaggttcagtaaaaagaaacccacatagtcacacagcctttgtggagctcacatttgaatgTTGCATCAAGTCGAGTTCACCTGATGCATTGTTCTTTACTCCAAGGTGCTTCCAGCTCCATCAGGAGGATTGGGTGGGTGTCCTGGGTCCAGAAGAATGGAGACTACCAACCTCTTTGCTCCTATTACAACCCTCCCTTGCCTGCACCACCCACTGCCCTTACTTTTGCATTTGTTATTCACATCATAGAATTTAAAGCAAGTCACACGGTTTCTCACATTACCTACATTTTACTCAGACGTTCTAGTTCTCATACACATTCTCTTACAACCTTTTCCAGGGCTAACTCCATGGAATGAtttttggtctttttgttttgtcttgttttgtttttgagagagagtcttgctctgtcacccaggcagtggcatggtctcagctcactgtaaactccgcctcccaagttcaagtgtttctcctgGATTCAAG</dnaseq>| | sequence = <dnaseq>ATGTCCTTAAGTCACAGttaattcatttaatgcacactttaagtgtctactgtcaggcactgtcctagatgtgggaggttcagtaaaaagaaacccacatagtcacacagcctttgtggagctcacatttgaatgTTGCATCAAGTCGAGTTCACCTGATGCATTGTTCTTTACTCCAAGGTGCTTCCAGCTCCATCAGGAGGATTGGGTGGGTGTCCTGGGTCCAGAAGAATGGAGACTACCAACCTCTTTGCTCCTATTACAACCCTCCCTTGCCTGCACCACCCACTGCCCTTACTTTTGCATTTGTTATTCACATCATAGAATTTAAAGCAAGTCACACGGTTTCTCACATTACCTACATTTTACTCAGACGTTCTAGTTCTCATACACATTCTCTTACAACCTTTTCCAGGGCTAACTCCATGGAATGAtttttggtctttttgttttgtcttgttttgtttttgagagagagtcttgctctgtcacccaggcagtggcatggtctcagctcactgtaaactccgcctcccaagttcaagtgtttctcctgGATTCAAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(S)]][[Category:NONHSAG010361]][[Category:Transcripts]] | + | [[Category:Intronic(S)]][[Category:NONHSAG010361]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:52, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT026223 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(S) |
| Length |
564 nt |
| Genomic location |
chr12-:7239877..7240440 |
| Exon number |
1 |
| Exons |
7239877..7240440 |
| Genome context |
|
| Sequence |
000001 ATGTCCTTAA GTCACAGtta attcatttaa tgcacacttt aagtgtctac tgtcaggcac tgtcctagat gtgggaggtt 000080
000081 cagtaaaaag aaacccacat agtcacacag cctttgtgga gctcacattt gaatgTTGCA TCAAGTCGAG TTCACCTGAT 000160 000161 GCATTGTTCT TTACTCCAAG GTGCTTCCAG CTCCATCAGG AGGATTGGGT GGGTGTCCTG GGTCCAGAAG AATGGAGACT 000240 000241 ACCAACCTCT TTGCTCCTAT TACAACCCTC CCTTGCCTGC ACCACCCACT GCCCTTACTT TTGCATTTGT TATTCACATC 000320 000321 ATAGAATTTA AAGCAAGTCA CACGGTTTCT CACATTACCT ACATTTTACT CAGACGTTCT AGTTCTCATA CACATTCTCT 000400 000401 TACAACCTTT TCCAGGGCTA ACTCCATGGA ATGAtttttg gtctttttgt tttgtcttgt tttgtttttg agagagagtc 000480 000481 ttgctctgtc acccaggcag tggcatggtc tcagctcact gtaaactccg cctcccaagt tcaagtgttt ctcctgGATT 000560 000561 CAAG |
Predicted Small Protein
| Name | NONHSAT026223_smProtein_158:433 |
| Length | 92 |
| Molecular weight | 10261.6306 |
| Aromaticity | 0.10989010989 |
| Instability index | 77.889010989 |
| Isoelectric point | 9.50823974609 |
| Runs | 10 |
| Runs residual | 0.0235805860806 |
| Runs probability | 0.0944532768062 |
| Amino acid sequence | MHCSLLQGASSSIRRIGWVSWVQKNGDYQPLCSYYNPPLPAPPTALTFAFVIHIIEFKAS HTVSHITYILLRRSSSHTHSLTTFSRANSME |
| Secondary structure | LLLLLLLLLLLLLEEEEEEEEEELLLLLLLLLLLLLLLLLLLLLHHHHHEEEEEEEEELL LLLLEEEEEEEEELLLLLLLLLEEEELLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL |
| PiMo | oooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTT TTTTiiiiiiiiiiiiiiiiiiiiiiiiiii |
