Difference between revisions of "LncRNAWiki:Nervous System Diseases"

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{|class="wikitable sortable" style="width:90%;text-align:center"
 
{|class="wikitable sortable" style="width:90%;text-align:center"
 
|-
 
|-
 +
!width="50"|Name
 +
!width="50"|Transcript ID
 +
!width="50"|Alias
 +
!width="50"|Description
 
!width="50"|Disease
 
!width="50"|Disease
−
!width="50"|LncRNAs
 
 
|-
 
|-
−
|Alzheimer's disease
 
−
|''SNHG3'', ''LINC01616'', ''LINC01080'', ''BACE1-AS'', ''BCYRN1'', ''HAR1A'', ''SOX2-OT'', ''LINC01772''
 
−
|-
 
−
|dermatomyositis
 
 
|''7SL''
 
|''7SL''
 +
|[[lnc-LRR1-1:1]]
 +
|"7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486"
 +
|"RNA, 7SL, cytoplasmic 1"
 +
|AIDS,dermatomyositis
 
|-
 
|-
−
|Down syndrome
+
|''BDNF-AS''
−
|''DSCR4'', ''DSCR8''
+
|[[ENST00000499008.3]]
 +
|BDNF antisense RNA
 +
|"BT2A, BT2B,BT2C,BT2D,NCRNA00049,BDNF-AS1, NCRNA00049"
 +
|Huntington's disease, psychiatric disease, schizophrenia, obesity
 
|-
 
|-
−
|Duchenne muscular dystrophy
+
|''BCYRN1''
−
|''LINCMD1''
+
|[[lnc-EPCAM-1:2]]
 +
|"BC200,BC200a, NCRNA00004, LINC00004"
 +
|"BCYRN1, brain cytoplasmic RNA 1"
 +
|Alzheimer's disease,breast cancer,cervical cancer, lung cancer,oesophagus cancer, ovarian cancer, parotid cancer,tongue cancer
 
|-
 
|-
−
|facioscapulohumeral muscular dystrophy
 
 
|''DBET''
 
|''DBET''
−
|Huntington's disease
+
|[[NONHSAT099821]]
−
|''HAR1A'', ''TUG1'', ''MEG3'', ''NOP14-AS1'', ''HTT-AS'', ''BDNF-AS'', ''HAR1B''
+
|"DBE-T, DUX4L30"
 +
|D4Z4 binding element transcript (non-protein coding)
 +
|Pancreatic ductal adenocarcinoma, Facioscapulohumeral muscular dystrophy
 +
|-
 +
|''DHFR upstream transcripts''
 +
|[[NONHSAT102417]]
 +
|"DHFR minor transcript 5'-UTR, ENSG00000228716"
 +
|N/A
 +
|_
 +
|-
 +
|''PWRN1''
 +
|[[NONHSAT040920]]
 +
|NCRNA00198
 +
|Prader-Willi region non-protein coding RNA 1
 +
|Prader-Willi syndrome
 +
|-
 +
|''PWRN2''
 +
|[[NONHSAT040875]]
 +
|NCRNA00199
 +
|Prader-Willi region non-protein coding RNA 2
 +
|Prader-Willi syndrome
 +
|-
 +
|''SCAANT1''
 +
|[[SCAANT1]]
 +
|SCA7/ATXN7 antisense RNA 1
 +
|ATXN7-AS1
 +
|Spinocerebellar ataxia type 7
 +
|-
 +
|''H19''
 +
|[[NONHSAT017465]]
 +
|"Q96MK8,ENSG00000130600"
 +
|"H19, imprinted maternally expressed transcript (non-protein coding)"
 +
|bladder cancer, breast cancer, cervical cancer, choricarcinoma, colon cancer, Congenital hyperinsulinism, Esophageal squamous cell cancer, gastric cancer, germ cell tumor, gestational choriocarcinoma, glioblastoma, glioma, growth restriction, hematopoiesis, infertility, kidney cancer, liver cancer, lung cancer, Marek's disease, Medulloblastoma, melanoma, Meningioma, Mullerian aplasia, myeloproliferative polycythaemia vera, neural tube defects, neuroblastoma, obesity, ovarian cancer, pheochromocytoma, pituitary adenoma, Prader-Willi syndrome, pre-eclampsia, prostate cancer, Silver-Russell syndrome, Wiedemann-Beckwith syndrome, Wilms' tumor
 +
|-
 +
|''HAR1A''
 +
|[[lnc-BIRC7-2:1]]
 +
|"HAR1F, ENSG00000238820"
 +
|highly accelerated region 1A
 +
|Alzheimer's disease,Huntington's disease, schizophrenia
 +
|-
 +
|''HAR1B''
 +
|[[ENST00000447910.2]]
 +
|"HAR1R, ENSG00000231133"
 +
|highly accelerated region 1B
 +
|Huntington's disease, schizophrenia
 +
|-
 +
|''IPW''
 +
|[[NONHSAT041063]]
 +
|NCRNA00002
 +
|imprinted in Prader-Willi syndrome
 +
|Prader-Willi syndrome
 +
|-
 +
|''MEG3''
 +
|[[NONHSAT039745]]
 +
|"Gtl2, ENSG00000214548"
 +
|maternally expressed 3 (non-protein coding)
 +
|bladder cancer, breast cancer, chronic myeloid leukemia, colon cancer, gastric cancer, glioma, hepatocelluar carcinoma, heroin abuse, Huntington's disease, kidney cancer, lung cancer, Meningioma, myelodysplastic syndrome, nonfunctioning pituitary adenomas, Pituitary adenoma, prostate cancer, type 1 diabetes
 +
|-
 +
|''MEG8''
 +
|[[ENST00000553584.1]]
 +
|"Bsr, ""Imprinted RNA near Meg3/Gtl2"", Irm, LINC00024, ""long intergenic non-protein coding RNA 24"", NCRNA00024, ""non-protein coding RNA 24"", Rian, ""RNA Imprinted and Accumulated in Nucleus"", ENSG00000258399"
 +
|Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8
 +
|Prader-Willi/Angelman syndrome
 +
|-
 +
|''ATXN8OS''
 +
|[[NONHSAT034251]]
 +
|"NCRNA00003, ""non-protein coding RNA 3"", ATXN8OS, KLHL1AS, SCA8, ENSG00000230223"
 +
|Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand
 +
|human spinocerebellar ataxia type 8,Spinocerebellar ataxia type 8
 +
|-
 +
|''SNHG3''
 +
|[[lnc-OR10H5-1:1]]
 +
|"U17HG, linc1343, ENSG00000242125"
 +
|Small nucleolar RNA host gene 3
 +
|Alzheimer's disease
 +
|-
 +
|''IFNG-AS1''
 +
|[[ENST00000538665.1]]
 +
|"LincR-Ifng-3'AS, NEST, "Theiler's murine encephalomyelitis virus persistence candidate gene 1", Tmevpg1, ENSG00000255733"
 +
|IFNG antisense RNA 1
 +
|multiple sclerosis
 +
|-
 +
|''TUG1''
 +
|[[NONHSAT084827]]
 +
|ENSG00000253352
 +
|taurine up-regulated gene 1
 +
|B-cell neoplasms, bladder cancer, Huntington's disease, non-small cell lung cancer
 
|-
 
|-
−
|ischemic stroke
 
 
|''CDKN2B-AS1''
 
|''CDKN2B-AS1''
 +
|[[NONHSAT130421]],
 +
[[lnc-C9orf53-2:1]]
 +
|"ANRIL, p15AS, ENSG00000240498"
 +
|CDKN2B antisense RNA 1
 +
|abdominal aortic aneurysm,acute lymphoblastic leukemia,basal cell carcinoma,breast cancer,cardiovascular disease,coronary artery disease,coronary heart disease,Diabetes,endometriosis,Esophageal squamous cell cancer,gastric cancer,glioma,hereditary cutaneous malignant melanoma,intracranial aneurism,ischemic stroke,melanoma,myocardial infarction,nasopharyngeal carcinoma,neural system tumors syndrome,Neurofibromatosis type 1,periodontitis,prostate cancer,
 +
|-
 +
|''BACE1-AS''
 +
|[[NONHSAT024403]],[[lnc-RNF214-1:2]]
 +
|"BACE1AS,NCRNA00177; FJ573250"
 +
|BACE1 antisense RNA
 +
|Alzheimer's disease,
 +
|-
 +
|''Beta-globin transcripts''
 +
|[[NONHSAT017676]],
 +
[[NONHSAT017675]],
 +
[[NONHSAT017674]]
 +
|N/A
 +
|N/A
 +
|_
 +
|-
 +
|''LINC00581''
 +
|[[lnc-PRL-6:2]],
 +
[[lnc-PRL-6:1]]
 +
|"BX118339,Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678"
 +
|long intergenic non-protein coding RNA 581
 +
|West Syndrome
 
|-
 
|-
−
|multiple sclerosis
+
|''CAR Intergenic 10''
−
|''IFNG-AS1''
+
|[[NONHSAT016928]],
 +
[[lnc-FANK1-3:1]]
 +
|"Intergenic10, CR611911, AK055628"
 +
|Chromatin Associated RNA 10
 +
|_
 +
|-
 +
|''CLRN1-AS1''
 +
|[[CLRN1-AS1]]
 +
|UCRP
 +
|CLRN1 antisense RNA 1
 +
|Usher syndrome type 3
 
|-
 
|-
−
|myotonic dystrophy
+
|''HTT-AS''
−
|''DM1-AS''
+
|[[HTT-AS]]
 +
|HTTAS
 +
|HTT antisense RNA (head to head)
 +
|Huntington's disease
 
|-
 
|-
−
|narcolepsy
 
 
|''LINC00165''
 
|''LINC00165''
 +
|[[LINC00165]]
 +
|NLC1-B
 +
|long intergenic non-protein coding RNA 165
 +
| narcolepsy
 +
|-
 +
|''LINC01080''
 +
|[[LINC01080]]
 +
|TCONSN/A00021856
 +
|long intergenic non-protein coding RNA 1080
 +
|Alzheimer's disease ;amnestic mild cognitive impairment
 +
|-
 +
|''LINC01616''
 +
|[[LINC01616]]
 +
|n341006
 +
|long intergenic non-protein coding RNA 1616
 +
|Alzheimer's disease
 +
|-
 +
|''LINCMD1''
 +
|[[LINCMD1]]
 +
|N/A
 +
|"long intergenic non-protein coding RNA, muscle differentiation 1"
 +
|Duchenne muscular dystrophy
 
|-
 
|-
−
|neural tube defects
+
|''MIR17HG''
−
|''H19''
+
|[[MIR17HG]]
 +
|"FLJ14178, MIRH1, MIHG1, NCRNA00048, miR-17-92, LINC00048"
 +
|miR-17-92a-1 cluster host gene
 +
|lymphoma, syndromic developmental defect
 
|-
 
|-
−
|neurodevelopmental syndromes
+
|''MKRN3-AS1''
−
|''SOX2-OT''
+
|[[MKRN3-AS1]]
 +
|"FNZ127, NCRNA00009, ZNF127-AS"
 +
|MKRN3 antisense RNA 1
 +
|Prader-Willi syndrome ;Angelman syndromes
 
|-
 
|-
−
|Parkinson's Disease
+
|''NOP14-AS1''
−
|''MAPT-AS1''
+
|[[NOP14-AS1]]
 +
|RES4-24
 +
|NOP14 antisense RNA 1
 +
|Huntington disease
 
|-
 
|-
 +
|''PWARSN''
 +
|[[PWARSN]]
 +
|"PAR-SN, PARSN"
 +
|"Prader Willi/Angelman region RNA, SNRPN neighbor"
 
|Prader-Willi syndrome
 
|Prader-Willi syndrome
−
|''MKRN3-AS1'', ''SNHG14'', ''PWRN1'', ''PWRN2'', ''IPW'', ''PWARSN'', ''MKRN3-AS1'', ''H19'', ''MEG8''
 
 
|-
 
|-
−
|psychiatric disease
+
|''SNHG14''
−
|''BDNF-AS''
+
|[[SNHG14]]
 +
|"NCRNA00214, UBE3A-AS"
 +
|small nucleolar RNA host gene 14
 +
| Prader-Willi
 +
|-
 +
|''SOX2-OT''
 +
|[[SOX2-OT]]
 +
|"DKFZp761J1324, NCRNA00043"
 +
|SOX2 overlapping transcript
 +
|Esophageal squamous cell cancer, Alzheimer's disease,Neurodevelopmental syndromes associated with the SOX2 locus
 +
|-
 +
|''DM1-AS''
 +
|[[DM1-AS]]
 +
|N/A
 +
|DM1 locus antisense RNA
 +
|Myotonic dystrophy type 1
 +
|-
 +
|''DSCR4''
 +
|[[DSCR4]]
 +
|DCRB
 +
|Down syndrome critical region 4
 +
|Down syndrome
 
|-
 
|-
−
|spinocerebellar ataxia
+
|''DSCR8''
−
|''SCAANT1'', ''ATXN8OS''
+
|[[DSCR8]]
 +
|C21orf65, MTAG2, CT25.1a, CT25.1b, MMA-1a, MMA-1b
 +
|Down syndrome critical region 8 (non-protein coding)
 +
|Down syndrome, melanoma
 
|-
 
|-
−
|syndromic developmental defect
+
|''LINC01772''
−
|''MIR17HG''
+
|[[ENST00000457898.1]]
 +
|ENSG00000226029
 +
|long intergenic non-protein coding RNA 1772
 +
|alzheimer's disease, ovarian cancer, pancreatic cancer,gastric cancer
 
|-
 
|-
−
|Usher syndrome type 3
+
|''MAPT-AS1''
−
|''CLRN1-AS1''
+
|[[MAPT-AS1]]
 +
|N/A
 +
|MAPT antisense RNA 1
 +
|Parkinson's Disease
 
|-
 
|-
−
|West Syndrome
 
−
|''LINC00581''
 
−
|}
 

Latest revision as of 04:12, 30 June 2017

Name Transcript ID Alias Description Disease
7SL lnc-LRR1-1:1 "7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486" "RNA, 7SL, cytoplasmic 1" AIDS,dermatomyositis
BDNF-AS ENST00000499008.3 BDNF antisense RNA "BT2A, BT2B,BT2C,BT2D,NCRNA00049,BDNF-AS1, NCRNA00049" Huntington's disease, psychiatric disease, schizophrenia, obesity
BCYRN1 lnc-EPCAM-1:2 "BC200,BC200a, NCRNA00004, LINC00004" "BCYRN1, brain cytoplasmic RNA 1" Alzheimer's disease,breast cancer,cervical cancer, lung cancer,oesophagus cancer, ovarian cancer, parotid cancer,tongue cancer
DBET NONHSAT099821 "DBE-T, DUX4L30" D4Z4 binding element transcript (non-protein coding) Pancreatic ductal adenocarcinoma, Facioscapulohumeral muscular dystrophy
DHFR upstream transcripts NONHSAT102417 "DHFR minor transcript 5'-UTR, ENSG00000228716" N/A _
PWRN1 NONHSAT040920 NCRNA00198 Prader-Willi region non-protein coding RNA 1 Prader-Willi syndrome
PWRN2 NONHSAT040875 NCRNA00199 Prader-Willi region non-protein coding RNA 2 Prader-Willi syndrome
SCAANT1 SCAANT1 SCA7/ATXN7 antisense RNA 1 ATXN7-AS1 Spinocerebellar ataxia type 7
H19 NONHSAT017465 "Q96MK8,ENSG00000130600" "H19, imprinted maternally expressed transcript (non-protein coding)" bladder cancer, breast cancer, cervical cancer, choricarcinoma, colon cancer, Congenital hyperinsulinism, Esophageal squamous cell cancer, gastric cancer, germ cell tumor, gestational choriocarcinoma, glioblastoma, glioma, growth restriction, hematopoiesis, infertility, kidney cancer, liver cancer, lung cancer, Marek's disease, Medulloblastoma, melanoma, Meningioma, Mullerian aplasia, myeloproliferative polycythaemia vera, neural tube defects, neuroblastoma, obesity, ovarian cancer, pheochromocytoma, pituitary adenoma, Prader-Willi syndrome, pre-eclampsia, prostate cancer, Silver-Russell syndrome, Wiedemann-Beckwith syndrome, Wilms' tumor
HAR1A lnc-BIRC7-2:1 "HAR1F, ENSG00000238820" highly accelerated region 1A Alzheimer's disease,Huntington's disease, schizophrenia
HAR1B ENST00000447910.2 "HAR1R, ENSG00000231133" highly accelerated region 1B Huntington's disease, schizophrenia
IPW NONHSAT041063 NCRNA00002 imprinted in Prader-Willi syndrome Prader-Willi syndrome
MEG3 NONHSAT039745 "Gtl2, ENSG00000214548" maternally expressed 3 (non-protein coding) bladder cancer, breast cancer, chronic myeloid leukemia, colon cancer, gastric cancer, glioma, hepatocelluar carcinoma, heroin abuse, Huntington's disease, kidney cancer, lung cancer, Meningioma, myelodysplastic syndrome, nonfunctioning pituitary adenomas, Pituitary adenoma, prostate cancer, type 1 diabetes
MEG8 ENST00000553584.1 "Bsr, ""Imprinted RNA near Meg3/Gtl2"", Irm, LINC00024, ""long intergenic non-protein coding RNA 24"", NCRNA00024, ""non-protein coding RNA 24"", Rian, ""RNA Imprinted and Accumulated in Nucleus"", ENSG00000258399" Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8 Prader-Willi/Angelman syndrome
ATXN8OS NONHSAT034251 "NCRNA00003, ""non-protein coding RNA 3"", ATXN8OS, KLHL1AS, SCA8, ENSG00000230223" Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand human spinocerebellar ataxia type 8,Spinocerebellar ataxia type 8
SNHG3 lnc-OR10H5-1:1 "U17HG, linc1343, ENSG00000242125" Small nucleolar RNA host gene 3 Alzheimer's disease
IFNG-AS1 ENST00000538665.1 "LincR-Ifng-3'AS, NEST, "Theiler's murine encephalomyelitis virus persistence candidate gene 1", Tmevpg1, ENSG00000255733" IFNG antisense RNA 1 multiple sclerosis
TUG1 NONHSAT084827 ENSG00000253352 taurine up-regulated gene 1 B-cell neoplasms, bladder cancer, Huntington's disease, non-small cell lung cancer
CDKN2B-AS1 NONHSAT130421,

lnc-C9orf53-2:1

"ANRIL, p15AS, ENSG00000240498" CDKN2B antisense RNA 1 abdominal aortic aneurysm,acute lymphoblastic leukemia,basal cell carcinoma,breast cancer,cardiovascular disease,coronary artery disease,coronary heart disease,Diabetes,endometriosis,Esophageal squamous cell cancer,gastric cancer,glioma,hereditary cutaneous malignant melanoma,intracranial aneurism,ischemic stroke,melanoma,myocardial infarction,nasopharyngeal carcinoma,neural system tumors syndrome,Neurofibromatosis type 1,periodontitis,prostate cancer,
BACE1-AS NONHSAT024403,lnc-RNF214-1:2 "BACE1AS,NCRNA00177; FJ573250" BACE1 antisense RNA Alzheimer's disease,
Beta-globin transcripts NONHSAT017676,

NONHSAT017675, NONHSAT017674

N/A N/A _
LINC00581 lnc-PRL-6:2,

lnc-PRL-6:1

"BX118339,Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678" long intergenic non-protein coding RNA 581 West Syndrome
CAR Intergenic 10 NONHSAT016928,

lnc-FANK1-3:1

"Intergenic10, CR611911, AK055628" Chromatin Associated RNA 10 _
CLRN1-AS1 CLRN1-AS1 UCRP CLRN1 antisense RNA 1 Usher syndrome type 3
HTT-AS HTT-AS HTTAS HTT antisense RNA (head to head) Huntington's disease
LINC00165 LINC00165 NLC1-B long intergenic non-protein coding RNA 165 narcolepsy
LINC01080 LINC01080 TCONSN/A00021856 long intergenic non-protein coding RNA 1080 Alzheimer's disease ;amnestic mild cognitive impairment
LINC01616 LINC01616 n341006 long intergenic non-protein coding RNA 1616 Alzheimer's disease
LINCMD1 LINCMD1 N/A "long intergenic non-protein coding RNA, muscle differentiation 1" Duchenne muscular dystrophy
MIR17HG MIR17HG "FLJ14178, MIRH1, MIHG1, NCRNA00048, miR-17-92, LINC00048" miR-17-92a-1 cluster host gene lymphoma, syndromic developmental defect
MKRN3-AS1 MKRN3-AS1 "FNZ127, NCRNA00009, ZNF127-AS" MKRN3 antisense RNA 1 Prader-Willi syndrome ;Angelman syndromes
NOP14-AS1 NOP14-AS1 RES4-24 NOP14 antisense RNA 1 Huntington disease
PWARSN PWARSN "PAR-SN, PARSN" "Prader Willi/Angelman region RNA, SNRPN neighbor" Prader-Willi syndrome
SNHG14 SNHG14 "NCRNA00214, UBE3A-AS" small nucleolar RNA host gene 14 Prader-Willi
SOX2-OT SOX2-OT "DKFZp761J1324, NCRNA00043" SOX2 overlapping transcript Esophageal squamous cell cancer, Alzheimer's disease,Neurodevelopmental syndromes associated with the SOX2 locus
DM1-AS DM1-AS N/A DM1 locus antisense RNA Myotonic dystrophy type 1
DSCR4 DSCR4 DCRB Down syndrome critical region 4 Down syndrome
DSCR8 DSCR8 C21orf65, MTAG2, CT25.1a, CT25.1b, MMA-1a, MMA-1b Down syndrome critical region 8 (non-protein coding) Down syndrome, melanoma
LINC01772 ENST00000457898.1 ENSG00000226029 long intergenic non-protein coding RNA 1772 alzheimer's disease, ovarian cancer, pancreatic cancer,gastric cancer
MAPT-AS1 MAPT-AS1 N/A MAPT antisense RNA 1 Parkinson's Disease
Retrieved from "https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=LncRNAWiki:Nervous_System_Diseases&oldid=1273216"