Difference between revisions of "NONHSAT011178"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>gccgtatgaattatatctcaacattgtattagaaaataaaattaatgaagcatagaagttacggagaactactggaaagaagaaatacaagaactcaaggaagagacagccagacaacagtagagtgtgaaatgggaaccagcagaaaaaaagaaatagagaaaaatgatcaagccatttcagaagtacacaagggagactagacaccatggcaaagatcataaaagtagaaatgaaaTTTTATGTTTTTGAGACAGTGTCCTTGAGTTCAGACTCTCTCTTCCAGAGGGCAGTTTCACTCCTCCATACTTCTTACTTGGACTCTTCATCTGAGCATGGTTTTCAGTACAGTCAAGTGACTTTGGTGAAAAATGACATTTTCTTAAATGAGTACAAAACTTTTTACCAACAAAAAAAAGCAAGTAGTTATACTCAGGAAGAACTTCAAGACACTTACGGGTTTCTTCTGTTTGATACTGAAAAGCAGGCAAAATTGGTATGTCAGTGTGGACTCCGTGTTGGCAGCAGTGCTGTTACCACTCTGGGTGATCCAGCCAAAG</dnaseq>| | sequence = <dnaseq>gccgtatgaattatatctcaacattgtattagaaaataaaattaatgaagcatagaagttacggagaactactggaaagaagaaatacaagaactcaaggaagagacagccagacaacagtagagtgtgaaatgggaaccagcagaaaaaaagaaatagagaaaaatgatcaagccatttcagaagtacacaagggagactagacaccatggcaaagatcataaaagtagaaatgaaaTTTTATGTTTTTGAGACAGTGTCCTTGAGTTCAGACTCTCTCTTCCAGAGGGCAGTTTCACTCCTCCATACTTCTTACTTGGACTCTTCATCTGAGCATGGTTTTCAGTACAGTCAAGTGACTTTGGTGAAAAATGACATTTTCTTAAATGAGTACAAAACTTTTTACCAACAAAAAAAAGCAAGTAGTTATACTCAGGAAGAACTTCAAGACACTTACGGGTTTCTTCTGTTTGATACTGAAAAGCAGGCAAAATTGGTATGTCAGTGTGGACTCCGTGTTGGCAGCAGTGCTGTTACCACTCTGGGTGATCCAGCCAAAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG005113]][[Category:Transcripts]] |
Latest revision as of 20:02, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT011178 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
560 nt |
| Genomic location |
chr10+:5741456..5756170 |
| Exon number |
4 |
| Exons |
5741456..5741700,5754357..5754502,5754786..5754881,5756098..5756170 |
| Genome context |
|
| Sequence |
000001 gccgtatgaa ttatatctca acattgtatt agaaaataaa attaatgaag catagaagtt acggagaact actggaaaga 000080
000081 agaaatacaa gaactcaagg aagagacagc cagacaacag tagagtgtga aatgggaacc agcagaaaaa aagaaataga 000160 000161 gaaaaatgat caagccattt cagaagtaca caagggagac tagacaccat ggcaaagatc ataaaagtag aaatgaaaTT 000240 000241 TTATGTTTTT GAGACAGTGT CCTTGAGTTC AGACTCTCTC TTCCAGAGGG CAGTTTCACT CCTCCATACT TCTTACTTGG 000320 000321 ACTCTTCATC TGAGCATGGT TTTCAGTACA GTCAAGTGAC TTTGGTGAAA AATGACATTT TCTTAAATGA GTACAAAACT 000400 000401 TTTTACCAAC AAAAAAAAGC AAGTAGTTAT ACTCAGGAAG AACTTCAAGA CACTTACGGG TTTCTTCTGT TTGATACTGA 000480 000481 AAAGCAGGCA AAATTGGTAT GTCAGTGTGG ACTCCGTGTT GGCAGCAGTG CTGTTACCAC TCTGGGTGAT CCAGCCAAAG 000560 |
Predicted Small Protein
| Name | NONHSAT011178_smProtein_44:202 |
| Length | 53 |
| Molecular weight | 6064.6349 |
| Aromaticity | 0.0192307692308 |
| Instability index | 62.1884615385 |
| Isoelectric point | 7.93157958984 |
| Runs | 10 |
| Runs residual | 0.041938287701 |
| Runs probability | 0.0389595477831 |
| Amino acid sequence | MKHRSYGELLERRNTRTQGRDSQTTVECEMGTSRKKEIEKNDQAISEVHKGD |
| Secondary structure | LLLLLHHHHHHLLLLLLLLLLLLLEEEEEELLLLHHHEELLLLLLEEEELLL |
| PRMN | - |
| PiMo | - |
