Difference between revisions of "NONHSAT064307"

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sequence = <dnaseq>AGCCAGACCAGGAACCCACCAGAAGGAACCAATTCCGGACACATAACAAGCAGCAGTGAGGACACCAAAGACACAGACCCAGATGCAGAGGCAGAGGCAGCCACACAGCCCCTCCCAGCCACAATCACAACCTCATATTCATATAATCACAGACCCTCCACCCCACATAGTGGGTGGAATCCTGCCAGCGCATTCCACTCACACACACACAAAATCCCATTCTCACACACGTGCACCCAAGCCTCGTCCCGCACACACAACATGACAGGCCACAGAGCCGGCTGAGAGTCTCAGCACGCATGGACGCCTGCACTGCGCAGGTTGCAGCCCAGGCTGCAGGACCACAGGTGGCAGGGACGACACAGCAGGTGGCCGGCCAGGGAGTGGCAGTGGCCTCCATCCTCCCTGCTCAGCCACAGCCCCTGCTTCAGCGTCTGCCAGTCCAACTGTCAACTCATCCACTCAACTTTACAACTGGAATGTGGGGGCGTTCAGGGCCCTGCCACTGGTGACGGCCACTCTAAGTCCTACCCAATGCTGGGTAGGTCCTTTAAGAGGCCCAAGTCCTGGGCGCTACTATGAGGTTCTGTACGTGCACAGTGATGGCTCATGCCTGGCCGAGGTGAGCCCACTCAGTCTGGGTGGCACAGCCTAATCTAGGAACTGCTCTGCGGTTCTACATGGCTCTCAGCAGCCCAGTGAGTGTCCTCTGCACCGGGCGTGTCCCTCAGGTGCTCCTAGCCAGACCCTCCCTTGACACAGTAGGGCACAAACCGCTATTGGAGCGGCACTGGCACCCGAGTGTACAAGCGTCAGCATCCCTGCTGCCTTCCCCACCCCCAGCTGTCCCCACCTGCTGATTCTGCCCCTGGGGTCACACTTACAATTTAGGGTCCTGTCAGGAGACAAAAATCACGTGAGTGACATCAGCTCCCTCATATGTAGGTGCTGGGAAAAGGGCTTGTGGGGTGCCTGTATAAACTGGCCATAAAAATACGGGAATAAGTTGTGGAAAGCCACAAAAGGCCTCTGAGGAGGAAAGCCTCCTAATTGCCATCATGTTCCCATGCTCAGAGCAAGACCCGCTGTCTTCTCTGTAAACACTGTGCTCAGGGAGAAAGACACTTCTTTGAAACACTGGAATGTGGACAGACGTGCAGGCTCCCAGTCAAGGCCGCTCCTACTAGCTACTCTCCAACAAGTTAAAGTTATGCTGTTTGAGCACAAAGGAGACTCATTTAAACTGCTATTGCTATAGATTATGCCTGTGATGCACTGCCACCCTTTCACTGTTTCTCCCTGAACATCTGCTTCTTAGATCGAAGGGACTGTACTCAATAAATAGTGTGGAGACCAGAGCTCGGCACCTTTTGCAGCCTCCACATTTTGCACTGGCCCCCTGGCTCCCCACCTTTCACTCTTAACTTGTCTTTTCTCAATCCTTTGTCACCACCAGACTTCGGGTACCCTACGGGTAGTGTTGAGGCTGGTCCCCAACATGTAGGATCCCTTCACTGTGTCACATGTGTCCCTAACACACTTGCTACATCTCATGTCCTTTAGGTTCTGTGTTTTACTCCAGATAATGTTCTTTGAATCTAAATTACAGTTTACTGATTTCTCAAAAGCTGCACCTAATGTGCTATCCATTCAGACAGACATACTCACTTAGCAAATGTTTGTTGAGCCAGCACTCAGTGGCAGATTCTGTGCTAGGGCGTGCCAAGTGCAGACACACGTTTGCCAAGACACAGGGTCACATGTGCATGCACACTCAGACTTGCAGGCTTACACCAGTGTTCAGCCTGCTCCCAATCCCAGGGAGCTCCAGGGAGGACAGAGAGAATGTCACAACACCCAACCCCTCCCACTGCATGCTGAGTCCAGTTCCCGATACGCTGCCACCCCAACAGCATGGCCCAGGGCCGAGGGTCTCTCTGCAGACCTGCCCTGACCACATTCACACACACACACACACACACACACACACACACACAC</dnaseq>|
 
sequence = <dnaseq>AGCCAGACCAGGAACCCACCAGAAGGAACCAATTCCGGACACATAACAAGCAGCAGTGAGGACACCAAAGACACAGACCCAGATGCAGAGGCAGAGGCAGCCACACAGCCCCTCCCAGCCACAATCACAACCTCATATTCATATAATCACAGACCCTCCACCCCACATAGTGGGTGGAATCCTGCCAGCGCATTCCACTCACACACACACAAAATCCCATTCTCACACACGTGCACCCAAGCCTCGTCCCGCACACACAACATGACAGGCCACAGAGCCGGCTGAGAGTCTCAGCACGCATGGACGCCTGCACTGCGCAGGTTGCAGCCCAGGCTGCAGGACCACAGGTGGCAGGGACGACACAGCAGGTGGCCGGCCAGGGAGTGGCAGTGGCCTCCATCCTCCCTGCTCAGCCACAGCCCCTGCTTCAGCGTCTGCCAGTCCAACTGTCAACTCATCCACTCAACTTTACAACTGGAATGTGGGGGCGTTCAGGGCCCTGCCACTGGTGACGGCCACTCTAAGTCCTACCCAATGCTGGGTAGGTCCTTTAAGAGGCCCAAGTCCTGGGCGCTACTATGAGGTTCTGTACGTGCACAGTGATGGCTCATGCCTGGCCGAGGTGAGCCCACTCAGTCTGGGTGGCACAGCCTAATCTAGGAACTGCTCTGCGGTTCTACATGGCTCTCAGCAGCCCAGTGAGTGTCCTCTGCACCGGGCGTGTCCCTCAGGTGCTCCTAGCCAGACCCTCCCTTGACACAGTAGGGCACAAACCGCTATTGGAGCGGCACTGGCACCCGAGTGTACAAGCGTCAGCATCCCTGCTGCCTTCCCCACCCCCAGCTGTCCCCACCTGCTGATTCTGCCCCTGGGGTCACACTTACAATTTAGGGTCCTGTCAGGAGACAAAAATCACGTGAGTGACATCAGCTCCCTCATATGTAGGTGCTGGGAAAAGGGCTTGTGGGGTGCCTGTATAAACTGGCCATAAAAATACGGGAATAAGTTGTGGAAAGCCACAAAAGGCCTCTGAGGAGGAAAGCCTCCTAATTGCCATCATGTTCCCATGCTCAGAGCAAGACCCGCTGTCTTCTCTGTAAACACTGTGCTCAGGGAGAAAGACACTTCTTTGAAACACTGGAATGTGGACAGACGTGCAGGCTCCCAGTCAAGGCCGCTCCTACTAGCTACTCTCCAACAAGTTAAAGTTATGCTGTTTGAGCACAAAGGAGACTCATTTAAACTGCTATTGCTATAGATTATGCCTGTGATGCACTGCCACCCTTTCACTGTTTCTCCCTGAACATCTGCTTCTTAGATCGAAGGGACTGTACTCAATAAATAGTGTGGAGACCAGAGCTCGGCACCTTTTGCAGCCTCCACATTTTGCACTGGCCCCCTGGCTCCCCACCTTTCACTCTTAACTTGTCTTTTCTCAATCCTTTGTCACCACCAGACTTCGGGTACCCTACGGGTAGTGTTGAGGCTGGTCCCCAACATGTAGGATCCCTTCACTGTGTCACATGTGTCCCTAACACACTTGCTACATCTCATGTCCTTTAGGTTCTGTGTTTTACTCCAGATAATGTTCTTTGAATCTAAATTACAGTTTACTGATTTCTCAAAAGCTGCACCTAATGTGCTATCCATTCAGACAGACATACTCACTTAGCAAATGTTTGTTGAGCCAGCACTCAGTGGCAGATTCTGTGCTAGGGCGTGCCAAGTGCAGACACACGTTTGCCAAGACACAGGGTCACATGTGCATGCACACTCAGACTTGCAGGCTTACACCAGTGTTCAGCCTGCTCCCAATCCCAGGGAGCTCCAGGGAGGACAGAGAGAATGTCACAACACCCAACCCCTCCCACTGCATGCTGAGTCCAGTTCCCGATACGCTGCCACCCCAACAGCATGGCCCAGGGCCGAGGGTCTCTCTGCAGACCTGCCCTGACCACATTCACACACACACACACACACACACACACACACACACAC</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG025525]][[Category:Transcripts]]

Latest revision as of 22:53, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT064307

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1998 nt

Genomic location

chr19-:35085572..35166604

Exon number

2

Exons

35085572..35087499,35166535..35166604

Genome context

Sequence
000001 AGCCAGACCA GGAACCCACC AGAAGGAACC AATTCCGGAC ACATAACAAG CAGCAGTGAG GACACCAAAG ACACAGACCC 000080
000081 AGATGCAGAG GCAGAGGCAG CCACACAGCC CCTCCCAGCC ACAATCACAA CCTCATATTC ATATAATCAC AGACCCTCCA 000160
000161 CCCCACATAG TGGGTGGAAT CCTGCCAGCG CATTCCACTC ACACACACAC AAAATCCCAT TCTCACACAC GTGCACCCAA 000240
000241 GCCTCGTCCC GCACACACAA CATGACAGGC CACAGAGCCG GCTGAGAGTC TCAGCACGCA TGGACGCCTG CACTGCGCAG 000320
000321 GTTGCAGCCC AGGCTGCAGG ACCACAGGTG GCAGGGACGA CACAGCAGGT GGCCGGCCAG GGAGTGGCAG TGGCCTCCAT 000400
000401 CCTCCCTGCT CAGCCACAGC CCCTGCTTCA GCGTCTGCCA GTCCAACTGT CAACTCATCC ACTCAACTTT ACAACTGGAA 000480
000481 TGTGGGGGCG TTCAGGGCCC TGCCACTGGT GACGGCCACT CTAAGTCCTA CCCAATGCTG GGTAGGTCCT TTAAGAGGCC 000560
000561 CAAGTCCTGG GCGCTACTAT GAGGTTCTGT ACGTGCACAG TGATGGCTCA TGCCTGGCCG AGGTGAGCCC ACTCAGTCTG 000640
000641 GGTGGCACAG CCTAATCTAG GAACTGCTCT GCGGTTCTAC ATGGCTCTCA GCAGCCCAGT GAGTGTCCTC TGCACCGGGC 000720
000721 GTGTCCCTCA GGTGCTCCTA GCCAGACCCT CCCTTGACAC AGTAGGGCAC AAACCGCTAT TGGAGCGGCA CTGGCACCCG 000800
000801 AGTGTACAAG CGTCAGCATC CCTGCTGCCT TCCCCACCCC CAGCTGTCCC CACCTGCTGA TTCTGCCCCT GGGGTCACAC 000880
000881 TTACAATTTA GGGTCCTGTC AGGAGACAAA AATCACGTGA GTGACATCAG CTCCCTCATA TGTAGGTGCT GGGAAAAGGG 000960
000961 CTTGTGGGGT GCCTGTATAA ACTGGCCATA AAAATACGGG AATAAGTTGT GGAAAGCCAC AAAAGGCCTC TGAGGAGGAA 001040
001041 AGCCTCCTAA TTGCCATCAT GTTCCCATGC TCAGAGCAAG ACCCGCTGTC TTCTCTGTAA ACACTGTGCT CAGGGAGAAA 001120
001121 GACACTTCTT TGAAACACTG GAATGTGGAC AGACGTGCAG GCTCCCAGTC AAGGCCGCTC CTACTAGCTA CTCTCCAACA 001200
001201 AGTTAAAGTT ATGCTGTTTG AGCACAAAGG AGACTCATTT AAACTGCTAT TGCTATAGAT TATGCCTGTG ATGCACTGCC 001280
001281 ACCCTTTCAC TGTTTCTCCC TGAACATCTG CTTCTTAGAT CGAAGGGACT GTACTCAATA AATAGTGTGG AGACCAGAGC 001360
001361 TCGGCACCTT TTGCAGCCTC CACATTTTGC ACTGGCCCCC TGGCTCCCCA CCTTTCACTC TTAACTTGTC TTTTCTCAAT 001440
001441 CCTTTGTCAC CACCAGACTT CGGGTACCCT ACGGGTAGTG TTGAGGCTGG TCCCCAACAT GTAGGATCCC TTCACTGTGT 001520
001521 CACATGTGTC CCTAACACAC TTGCTACATC TCATGTCCTT TAGGTTCTGT GTTTTACTCC AGATAATGTT CTTTGAATCT 001600
001601 AAATTACAGT TTACTGATTT CTCAAAAGCT GCACCTAATG TGCTATCCAT TCAGACAGAC ATACTCACTT AGCAAATGTT 001680
001681 TGTTGAGCCA GCACTCAGTG GCAGATTCTG TGCTAGGGCG TGCCAAGTGC AGACACACGT TTGCCAAGAC ACAGGGTCAC 001760
001761 ATGTGCATGC ACACTCAGAC TTGCAGGCTT ACACCAGTGT TCAGCCTGCT CCCAATCCCA GGGAGCTCCA GGGAGGACAG 001840
001841 AGAGAATGTC ACAACACCCA ACCCCTCCCA CTGCATGCTG AGTCCAGTTC CCGATACGCT GCCACCCCAA CAGCATGGCC 001920
001921 CAGGGCCGAG GGTCTCTCTG CAGACCTGCC CTGACCACAT TCACACACAC ACACACACAC ACACACACAC ACACACAC
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Predicted Small Protein

Name NONHSAT064307_smProtein_299:511
Length 71
Molecular weight 7219.1856
Aromaticity 0.0428571428571
Instability index 51.6342857143
Isoelectric point 7.88055419922
Runs 11
Runs residual 0.0123055162659
Runs probability 0.0443625443626
Amino acid sequence MDACTAQVAAQAAGPQVAGTTQQVAGQGVAVASILPAQPQPLLQRLPVQLSTHPLNFTTG
MWGRSGPCHW
Secondary structure LLHHHHHHHHHHLLLLLLLLHHHHHLLLEEEEEELLLLLLLHHHLLLLEELLLLLLLLLL
LLLLLLLLLL
PRMN -
PiMo -