Difference between revisions of "NONHSAT087475"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ggactacaggtgcccaccgccatgcccggctaatgcttttttttttttttttttttttttttttagtagagacggggtttcactgtgttagccagaatggtcttgatctcctgacctcgtgatcagcccgcctcagcctcctaaagtgctgggattacaggtgtgagccaccacgcccggcTTGTTTTTTGTTTTTTAACAGACAGGGTcaacctccaactcctggactcaagcagttctcccacctcagcctcccaagtagctgagactacaggtttgtgccaccatgcctggctctttttttttttttttttcctttttgagagctgcactccagctctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaacctccacctcccgggttcaagcaattctcctaactcagcctccagagtagctgggattacaggcatacaatgcccagctaattttttgtatttttagtagagacagggtttcaccatgttgcccaggctggtctcaaacttctgagctcatgcaatccgcctgcctcagcctcccaaagtgctaagattataggcatgaaacactgtgcccggcctcattttgtattttttgtagagatgtgggttttgctatattgaccaagctggtctagaactcctgggctcaagtgctcctcccactgtgggcttccaaagtgctaggattacaggcatcagccagcacgcctagccTtttttttttttttttttttttaattttgttttgagacaggttcttgctgtaacctaggctggagtgcagtggtgatcatggctcactacagcctcgaattcctgggctcaagcaatcctccagcctcagcctcctgagtagctataactacaggtgcatgccaccacacctggctaatttatttttaattttggtagagacagggtctcactatgtttcctaggctagtctggaacacctggcctcaagtgatcctcctgcctcggcctcctaaagggctggattataggcaggaccactgcgcccagccCAAGAGGTGAGTTTTCAAGAGCTGAGAAGGCGGAGCCAGGCCCTTTCCTAAGCTGACCTGTACACTCCAGTCACCCCACAGTCCTGCCCAGCCCCTCACAAGCCAGATCCCTTGTCACCCCACAGCCCTGCTGGCCCCTCTCAAGCTGGACCCCTCATCTCTCAAGCAGGCTGCACTGCACTCATTTCCATGATGCTCCCATGCGTACAGTTGCGGGGGTATCCTGTGAGGGCTAAGGGGGAGTCCTGTGAGCACTATGGACTCTGAACCACTTACTCTCCATATCACTGGCACATAGtgtgaactcctaaagggcaagagccttgtctactcacttacatgctgggcaccAGTATTGTGGGGCTGGGCTGGTGATAGCTGCTCAATGTGATCTACGGttttgttttttgagacagagtttcactcttgttgcccaggctggagtgccatggcgcgatctcggctcaccacaacctccgcctcctgggttcaagcgatttgcctgcctcagcttcctgagtagctgggattacaggcgtgcgccaccacgcccggctaattttgtatttttagtagagacagggtttctctgtgttggtcaggctggtctcaaactcctgaactcaggtgatctgtccgcctcggcctcccaaagtgctaggattacaggcgtgagccaccatgcccagccTTCAAAGTGATTTACTGAATGAGTAACTGAATCACCAGCTCCTTGCCTTTTGCTTATGTTGGCATTTTGGGAGAGGGGTTACCTGAAACAGGACCCCCTCCCCTGTCTCTTCTCAGCATCCAAGACTTATTTACCTAAGCCCATTCCTTCCTCTGAGCTGCATGCATCCCAACTAGAGTCTTCCTTCCATATCGCAGAACCAAGCACAGTCCTGGGGCTTTGCAGTGCTTAGCTGGGCTGAGCTGTGACTGAGTTGCACAGTGGGTGCTCCCTAAGTCTGTAAGTGACTAAAACGACCTCGATCTTCCCTGTGACTTCCAGGTGAGGGAGGAAAGGCAAGAGTCATGTGCTCAGGCCCCGGTGGATCCACTGCCAGGTTTCTGCACAGACTCAGTGATCTGCAGGTGCCCAGATCATTGCTATGGAGGGTTTCGCTCATGGACCTGGGTCCCCAACACTCTGCCAGCTGACCATGCCCCTAGTCCGAGCTGAGCATCCCCAGCAAAAGCTCAGGAGTCCAAGCACACACAGCCTTCAACAGCTCAGAAATAACTTTCCGAATGGGTTTTAGAAAATAACACGAGAATGTCTTAAGGAACAGAGGAACCTCCtttttttttttttttttttttgagatggagtctcactttgtcgcccaagctggagcgcaatggtgcaatctctgctcactgcaacctccccctcccgggttcaagccattctcctcctcagtctcccgagtagctaggactacaggagtgtgccacctcgcccggctaatttctgtatttttagtggagatgtggtttcaccatgttggccaggatggtctcaaactgctgaccttgtgatctgcctgcctcggcctctcaaagtgctgggattacaggcatgagtcaccgcgtccggccAGGAACCTCTTAACTTCTTTTGTGATTTTGTGGGGAACAATCTGGGCAACAGTATTGAACTAAGAAAGGTTTTCAACCCTGGGCAGGTCACCACACTTCTTGGTACTCAGCCCCCACCCAGTGATGCTGTTTGAGGCTGTGCACCTGCTGGGGACCGTGTGTGGTGGGAGGGGCTCCAGAGAGTGCTAGAGTTAATGCTTTTCTGTTTAGAAGACTATATGCTTCtcatggcctcttggagttcagcagggccttagaaagcatctcccaaccacagagacgcgctgcctggctttcctgatgatgatgatttggcctgatcttggacacctgcggtaatagagagctcactacccctcaCGAGGTTCCTTGCGCCAGCGCGGGGAAGCCTCCCTCCATCTGCAGGTGGGCCTCCCCTGTGCTGGTCAGCTCCCTGGTGTGTGTTACACAGGACACAGAGAAGATCAT</dnaseq>| | sequence = <dnaseq>ggactacaggtgcccaccgccatgcccggctaatgcttttttttttttttttttttttttttttagtagagacggggtttcactgtgttagccagaatggtcttgatctcctgacctcgtgatcagcccgcctcagcctcctaaagtgctgggattacaggtgtgagccaccacgcccggcTTGTTTTTTGTTTTTTAACAGACAGGGTcaacctccaactcctggactcaagcagttctcccacctcagcctcccaagtagctgagactacaggtttgtgccaccatgcctggctctttttttttttttttttcctttttgagagctgcactccagctctgtcacccaggctggagtgcagtggcacgatctcagctcactgcaacctccacctcccgggttcaagcaattctcctaactcagcctccagagtagctgggattacaggcatacaatgcccagctaattttttgtatttttagtagagacagggtttcaccatgttgcccaggctggtctcaaacttctgagctcatgcaatccgcctgcctcagcctcccaaagtgctaagattataggcatgaaacactgtgcccggcctcattttgtattttttgtagagatgtgggttttgctatattgaccaagctggtctagaactcctgggctcaagtgctcctcccactgtgggcttccaaagtgctaggattacaggcatcagccagcacgcctagccTtttttttttttttttttttttaattttgttttgagacaggttcttgctgtaacctaggctggagtgcagtggtgatcatggctcactacagcctcgaattcctgggctcaagcaatcctccagcctcagcctcctgagtagctataactacaggtgcatgccaccacacctggctaatttatttttaattttggtagagacagggtctcactatgtttcctaggctagtctggaacacctggcctcaagtgatcctcctgcctcggcctcctaaagggctggattataggcaggaccactgcgcccagccCAAGAGGTGAGTTTTCAAGAGCTGAGAAGGCGGAGCCAGGCCCTTTCCTAAGCTGACCTGTACACTCCAGTCACCCCACAGTCCTGCCCAGCCCCTCACAAGCCAGATCCCTTGTCACCCCACAGCCCTGCTGGCCCCTCTCAAGCTGGACCCCTCATCTCTCAAGCAGGCTGCACTGCACTCATTTCCATGATGCTCCCATGCGTACAGTTGCGGGGGTATCCTGTGAGGGCTAAGGGGGAGTCCTGTGAGCACTATGGACTCTGAACCACTTACTCTCCATATCACTGGCACATAGtgtgaactcctaaagggcaagagccttgtctactcacttacatgctgggcaccAGTATTGTGGGGCTGGGCTGGTGATAGCTGCTCAATGTGATCTACGGttttgttttttgagacagagtttcactcttgttgcccaggctggagtgccatggcgcgatctcggctcaccacaacctccgcctcctgggttcaagcgatttgcctgcctcagcttcctgagtagctgggattacaggcgtgcgccaccacgcccggctaattttgtatttttagtagagacagggtttctctgtgttggtcaggctggtctcaaactcctgaactcaggtgatctgtccgcctcggcctcccaaagtgctaggattacaggcgtgagccaccatgcccagccTTCAAAGTGATTTACTGAATGAGTAACTGAATCACCAGCTCCTTGCCTTTTGCTTATGTTGGCATTTTGGGAGAGGGGTTACCTGAAACAGGACCCCCTCCCCTGTCTCTTCTCAGCATCCAAGACTTATTTACCTAAGCCCATTCCTTCCTCTGAGCTGCATGCATCCCAACTAGAGTCTTCCTTCCATATCGCAGAACCAAGCACAGTCCTGGGGCTTTGCAGTGCTTAGCTGGGCTGAGCTGTGACTGAGTTGCACAGTGGGTGCTCCCTAAGTCTGTAAGTGACTAAAACGACCTCGATCTTCCCTGTGACTTCCAGGTGAGGGAGGAAAGGCAAGAGTCATGTGCTCAGGCCCCGGTGGATCCACTGCCAGGTTTCTGCACAGACTCAGTGATCTGCAGGTGCCCAGATCATTGCTATGGAGGGTTTCGCTCATGGACCTGGGTCCCCAACACTCTGCCAGCTGACCATGCCCCTAGTCCGAGCTGAGCATCCCCAGCAAAAGCTCAGGAGTCCAAGCACACACAGCCTTCAACAGCTCAGAAATAACTTTCCGAATGGGTTTTAGAAAATAACACGAGAATGTCTTAAGGAACAGAGGAACCTCCtttttttttttttttttttttgagatggagtctcactttgtcgcccaagctggagcgcaatggtgcaatctctgctcactgcaacctccccctcccgggttcaagccattctcctcctcagtctcccgagtagctaggactacaggagtgtgccacctcgcccggctaatttctgtatttttagtggagatgtggtttcaccatgttggccaggatggtctcaaactgctgaccttgtgatctgcctgcctcggcctctcaaagtgctgggattacaggcatgagtcaccgcgtccggccAGGAACCTCTTAACTTCTTTTGTGATTTTGTGGGGAACAATCTGGGCAACAGTATTGAACTAAGAAAGGTTTTCAACCCTGGGCAGGTCACCACACTTCTTGGTACTCAGCCCCCACCCAGTGATGCTGTTTGAGGCTGTGCACCTGCTGGGGACCGTGTGTGGTGGGAGGGGCTCCAGAGAGTGCTAGAGTTAATGCTTTTCTGTTTAGAAGACTATATGCTTCtcatggcctcttggagttcagcagggccttagaaagcatctcccaaccacagagacgcgctgcctggctttcctgatgatgatgatttggcctgatcttggacacctgcggtaatagagagctcactacccctcaCGAGGTTCCTTGCGCCAGCGCGGGGAAGCCTCCCTCCATCTGCAGGTGGGCCTCCCCTGTGCTGGTCAGCTCCCTGGTGTGTGTTACACAGGACACAGAGAAGATCAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG034242]][[Category:Transcripts]] |
Latest revision as of 00:23, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT087475 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
3118 nt |
| Genomic location |
chr22+:50761414..50764531 |
| Exon number |
1 |
| Exons |
50761414..50764531 |
| Genome context |
|
| Sequence |
000001 ggactacagg tgcccaccgc catgcccggc taatgctttt tttttttttt tttttttttt ttttagtaga gacggggttt 000080
000081 cactgtgtta gccagaatgg tcttgatctc ctgacctcgt gatcagcccg cctcagcctc ctaaagtgct gggattacag 000160 000161 gtgtgagcca ccacgcccgg cTTGTTTTTT GTTTTTTAAC AGACAGGGTc aacctccaac tcctggactc aagcagttct 000240 000241 cccacctcag cctcccaagt agctgagact acaggtttgt gccaccatgc ctggctcttt tttttttttt ttttcctttt 000320 000321 tgagagctgc actccagctc tgtcacccag gctggagtgc agtggcacga tctcagctca ctgcaacctc cacctcccgg 000400 000401 gttcaagcaa ttctcctaac tcagcctcca gagtagctgg gattacaggc atacaatgcc cagctaattt tttgtatttt 000480 000481 tagtagagac agggtttcac catgttgccc aggctggtct caaacttctg agctcatgca atccgcctgc ctcagcctcc 000560 000561 caaagtgcta agattatagg catgaaacac tgtgcccggc ctcattttgt attttttgta gagatgtggg ttttgctata 000640 000641 ttgaccaagc tggtctagaa ctcctgggct caagtgctcc tcccactgtg ggcttccaaa gtgctaggat tacaggcatc 000720 000721 agccagcacg cctagccTtt tttttttttt ttttttttta attttgtttt gagacaggtt cttgctgtaa cctaggctgg 000800 000801 agtgcagtgg tgatcatggc tcactacagc ctcgaattcc tgggctcaag caatcctcca gcctcagcct cctgagtagc 000880 000881 tataactaca ggtgcatgcc accacacctg gctaatttat ttttaatttt ggtagagaca gggtctcact atgtttccta 000960 000961 ggctagtctg gaacacctgg cctcaagtga tcctcctgcc tcggcctcct aaagggctgg attataggca ggaccactgc 001040 001041 gcccagccCA AGAGGTGAGT TTTCAAGAGC TGAGAAGGCG GAGCCAGGCC CTTTCCTAAG CTGACCTGTA CACTCCAGTC 001120 001121 ACCCCACAGT CCTGCCCAGC CCCTCACAAG CCAGATCCCT TGTCACCCCA CAGCCCTGCT GGCCCCTCTC AAGCTGGACC 001200 001201 CCTCATCTCT CAAGCAGGCT GCACTGCACT CATTTCCATG ATGCTCCCAT GCGTACAGTT GCGGGGGTAT CCTGTGAGGG 001280 001281 CTAAGGGGGA GTCCTGTGAG CACTATGGAC TCTGAACCAC TTACTCTCCA TATCACTGGC ACATAGtgtg aactcctaaa 001360 001361 gggcaagagc cttgtctact cacttacatg ctgggcaccA GTATTGTGGG GCTGGGCTGG TGATAGCTGC TCAATGTGAT 001440 001441 CTACGGtttt gttttttgag acagagtttc actcttgttg cccaggctgg agtgccatgg cgcgatctcg gctcaccaca 001520 001521 acctccgcct cctgggttca agcgatttgc ctgcctcagc ttcctgagta gctgggatta caggcgtgcg ccaccacgcc 001600 001601 cggctaattt tgtattttta gtagagacag ggtttctctg tgttggtcag gctggtctca aactcctgaa ctcaggtgat 001680 001681 ctgtccgcct cggcctccca aagtgctagg attacaggcg tgagccacca tgcccagccT TCAAAGTGAT TTACTGAATG 001760 001761 AGTAACTGAA TCACCAGCTC CTTGCCTTTT GCTTATGTTG GCATTTTGGG AGAGGGGTTA CCTGAAACAG GACCCCCTCC 001840 001841 CCTGTCTCTT CTCAGCATCC AAGACTTATT TACCTAAGCC CATTCCTTCC TCTGAGCTGC ATGCATCCCA ACTAGAGTCT 001920 001921 TCCTTCCATA TCGCAGAACC AAGCACAGTC CTGGGGCTTT GCAGTGCTTA GCTGGGCTGA GCTGTGACTG AGTTGCACAG 002000 002001 TGGGTGCTCC CTAAGTCTGT AAGTGACTAA AACGACCTCG ATCTTCCCTG TGACTTCCAG GTGAGGGAGG AAAGGCAAGA 002080 002081 GTCATGTGCT CAGGCCCCGG TGGATCCACT GCCAGGTTTC TGCACAGACT CAGTGATCTG CAGGTGCCCA GATCATTGCT 002160 002161 ATGGAGGGTT TCGCTCATGG ACCTGGGTCC CCAACACTCT GCCAGCTGAC CATGCCCCTA GTCCGAGCTG AGCATCCCCA 002240 002241 GCAAAAGCTC AGGAGTCCAA GCACACACAG CCTTCAACAG CTCAGAAATA ACTTTCCGAA TGGGTTTTAG AAAATAACAC 002320 002321 GAGAATGTCT TAAGGAACAG AGGAACCTCC tttttttttt tttttttttt tgagatggag tctcactttg tcgcccaagc 002400 002401 tggagcgcaa tggtgcaatc tctgctcact gcaacctccc cctcccgggt tcaagccatt ctcctcctca gtctcccgag 002480 002481 tagctaggac tacaggagtg tgccacctcg cccggctaat ttctgtattt ttagtggaga tgtggtttca ccatgttggc 002560 002561 caggatggtc tcaaactgct gaccttgtga tctgcctgcc tcggcctctc aaagtgctgg gattacaggc atgagtcacc 002640 002641 gcgtccggcc AGGAACCTCT TAACTTCTTT TGTGATTTTG TGGGGAACAA TCTGGGCAAC AGTATTGAAC TAAGAAAGGT 002720 002721 TTTCAACCCT GGGCAGGTCA CCACACTTCT TGGTACTCAG CCCCCACCCA GTGATGCTGT TTGAGGCTGT GCACCTGCTG 002800 002801 GGGACCGTGT GTGGTGGGAG GGGCTCCAGA GAGTGCTAGA GTTAATGCTT TTCTGTTTAG AAGACTATAT GCTTCtcatg 002880 002881 gcctcttgga gttcagcagg gccttagaaa gcatctccca accacagaga cgcgctgcct ggctttcctg atgatgatga 002960 002961 tttggcctga tcttggacac ctgcggtaat agagagctca ctacccctca CGAGGTTCCT TGCGCCAGCG CGGGGAAGCC 003040 003041 TCCCTCCATC TGCAGGTGGG CCTCCCCTGT GCTGGTCAGC TCCCTGGTGT GTGTTACACA GGACACAGAG AAGATCAT |
Predicted Small Protein
| Name | NONHSAT087475_smProtein_950:1057 |
| Length | 36 |
| Molecular weight | 4257.987 |
| Aromaticity | 0.114285714286 |
| Instability index | 51.64 |
| Isoelectric point | 10.2844848633 |
| Runs | 5 |
| Runs residual | 0.0382566585956 |
| Runs probability | 0.0455926514751 |
| Amino acid sequence | MFPRLVWNTWPQVILLPRPPKGLDYRQDHCAQPKR |
| Secondary structure | LLLLLLLLLLLLEEELLLLLLLLLLLHHHLLLLLL |
| PRMN | - |
| PiMo | - |
