Difference between revisions of "NONHSAT088710"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>ATTATTAGCTGGCTATGAAGGAAAGAAATGCACTTAATTGGGTAAACAGTTTATTTCTTATCTTCTTTTAAGCTTTCTGAACGAACAGAATTTGGCTAGCTGGTTTTCTACCCTTGAAAGCATAAAGAAGCTTGGACTGTCTGAAAATACTCTTTTCTGGGAGTATGTTCGTAGACAACTGAAATAAACTGCAACTCACTGGTGCCAAATATATCACACATCAGCCCACCTCCTGCCACGGTGAGCTTGTAGCAGAGAAAAGAATGTTCTCAGGTTCAGAAAGGGGCTTCCCTGCTGAGGAGCCATGCTCTTTCCACGATGAAGAACTAGAGACCGTCTTGTGCAGTGGGCTGGCAGAGAGGAGCCGCACAGTGAAGTGTAAATTGCTCAGGATCACAATTCAGAGGACATGGGTTCTCACCTTGGCTCTATGACTCATTTTGTGCCTTTCACCCCTACAATCTCTCCGAACCTCAGTCTCTGAATGAATGAAATGAGACTGACCAAACCAATCTGGCTAAATATAAAGGTATAACATCCTGATC</dnaseq>| | sequence = <dnaseq>ATTATTAGCTGGCTATGAAGGAAAGAAATGCACTTAATTGGGTAAACAGTTTATTTCTTATCTTCTTTTAAGCTTTCTGAACGAACAGAATTTGGCTAGCTGGTTTTCTACCCTTGAAAGCATAAAGAAGCTTGGACTGTCTGAAAATACTCTTTTCTGGGAGTATGTTCGTAGACAACTGAAATAAACTGCAACTCACTGGTGCCAAATATATCACACATCAGCCCACCTCCTGCCACGGTGAGCTTGTAGCAGAGAAAAGAATGTTCTCAGGTTCAGAAAGGGGCTTCCCTGCTGAGGAGCCATGCTCTTTCCACGATGAAGAACTAGAGACCGTCTTGTGCAGTGGGCTGGCAGAGAGGAGCCGCACAGTGAAGTGTAAATTGCTCAGGATCACAATTCAGAGGACATGGGTTCTCACCTTGGCTCTATGACTCATTTTGTGCCTTTCACCCCTACAATCTCTCCGAACCTCAGTCTCTGAATGAATGAAATGAGACTGACCAAACCAATCTGGCTAAATATAAAGGTATAACATCCTGATC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG034618]][[Category:Transcripts]] |
Latest revision as of 00:27, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT088710 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
545 nt |
| Genomic location |
chr3-:25424599..25426409 |
| Exon number |
2 |
| Exons |
25424599..25424870,25426137..25426409 |
| Genome context |
|
| Sequence |
000001 ATTATTAGCT GGCTATGAAG GAAAGAAATG CACTTAATTG GGTAAACAGT TTATTTCTTA TCTTCTTTTA AGCTTTCTGA 000080
000081 ACGAACAGAA TTTGGCTAGC TGGTTTTCTA CCCTTGAAAG CATAAAGAAG CTTGGACTGT CTGAAAATAC TCTTTTCTGG 000160 000161 GAGTATGTTC GTAGACAACT GAAATAAACT GCAACTCACT GGTGCCAAAT ATATCACACA TCAGCCCACC TCCTGCCACG 000240 000241 GTGAGCTTGT AGCAGAGAAA AGAATGTTCT CAGGTTCAGA AAGGGGCTTC CCTGCTGAGG AGCCATGCTC TTTCCACGAT 000320 000321 GAAGAACTAG AGACCGTCTT GTGCAGTGGG CTGGCAGAGA GGAGCCGCAC AGTGAAGTGT AAATTGCTCA GGATCACAAT 000400 000401 TCAGAGGACA TGGGTTCTCA CCTTGGCTCT ATGACTCATT TTGTGCCTTT CACCCCTACA ATCTCTCCGA ACCTCAGTCT 000480 000481 CTGAATGAAT GAAATGAGAC TGACCAAACC AATCTGGCTA AATATAAAGG TATAACATCC TGATC |
Predicted Small Protein
| Name | NONHSAT088710_smProtein_263:433 |
| Length | 57 |
| Molecular weight | 6356.2913 |
| Aromaticity | 0.0714285714286 |
| Instability index | 40.8535714286 |
| Isoelectric point | 5.70538330078 |
| Runs | 7 |
| Runs residual | 0.0282982045277 |
| Runs probability | 0.0278345572464 |
| Amino acid sequence | MFSGSERGFPAEEPCSFHDEELETVLCSGLAERSRTVKCKLLRITIQRTWVLTLAL |
| Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLEEEEEEEEEEEEEEEELLEELLLLL |
| PRMN | - |
| PiMo | - |
