Difference between revisions of "NONHSAT101361"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>aagagtcacacatctctcacgttaaatcaaaagttagaaatgattgagcttagtgacaaaggcatgttgaaggccaaaacagaccaaaatctacgtttcttatgccaaacagttagccaagttgtgaatgcaaaggaaaagttcttgaaggaaattaaaaaggctacttcagtgaacacaggagtgataagaaagagaaacagccttgctgttgatgtggagaaagtttgagtggtctggatagaagatcaaatcacccacagcattccctaagccaagtcctaatccagaccaaggcagttactccgttcaattcagtgaaggctgagagaaatgaggaagctacagaagaaaagtttgcagccagcagagtttggttcttaagatctaaggaaagaagtaatgtccagaacagaaaagtgcaaggtgatgcagcaactggtaaggtagaagcttcagcaagttattcaggtatagctaagataattcatgaaggtgaacgaaggtggctacactaaacaacatattttcaatgtagaccaaacatccttctattggaggaaaatgccatctaggaatttaatagctaaagatgaaaaatcaatgcctgtttaaatcttcaaagaacagtctgactctctttttaggagctaatgtagctggtgactttaagttgaagccaatgttcattgactatcctgaaaattctaaggtccttattctcagcaaactatcgcaaggacaaaaaaccaaacaccacatgttctcactcataattgggaactgaacaatgaaacacatggacacaggaaggggaacatcacacaccagggactgttgtggtgggggcggggagggatagcattaggagatgtacctaatgctaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatgcatatgtaacaaacctgcacgttgcgcacatgtaccctaaaacttaaagtataataaaaaaaaggaaataagctcaatctactctgcctgtgctctataaataaaataacaaagcttggatgtcagcacatttgtttacaacatagtttaccaaatactttaagcccactcttgagacctactgctcagaaaaaaagatttctttcaaaatatcactgctcattgacaatgcaccaagtcactcacataagagctctgatgaagatgtacaaggagattaatttaatgctgttttcatgactgctaacacagcatccattctgcagcccatgcttcaaagagtattttcaactttcaagtgttatgatttaagaaatatatttttatatatttatgaagtatagctgccatagatggtgattcctctgataaatctgggcaaaataaattgtaaacctaggattcaccatcctagatgtcattaagaacactgttgattgatgggaggaggtcaaaatataaacattaaaagaaatttggaagaagttgattctaaccaccatggatgaccttgccggattcaagaattcaatggaagaagtaactgcagatgtgttggaaataataaaagaactagaattagaagtggcgcctcaagaagtgactacattgctgcaatctcatgacaaaagttgaatgaatgagaagttgcttatagataagtgaagtggtttcttgagatggaatctacacctgataaagatgctatgaatattgttgaactggcaacaaaagatttggactattacataaacttatttaatgaagcagaagcagaggcagtgtttaagaagactgacttcatttagaagttctaccatgtgtaaaatgccatgaaatagcatcataagctacagatacatttttctgaaggaagagtaaattgatgtggccaacttccttgttgtcctattctaacaaattgccacagtcaccccaacttacagcaaccacccttctggtcagacagcagtcatcaacatcaaagcaagacctcccaccagcaaaaagtatcactagttgaaggctcag</dnaseq>| | sequence = <dnaseq>aagagtcacacatctctcacgttaaatcaaaagttagaaatgattgagcttagtgacaaaggcatgttgaaggccaaaacagaccaaaatctacgtttcttatgccaaacagttagccaagttgtgaatgcaaaggaaaagttcttgaaggaaattaaaaaggctacttcagtgaacacaggagtgataagaaagagaaacagccttgctgttgatgtggagaaagtttgagtggtctggatagaagatcaaatcacccacagcattccctaagccaagtcctaatccagaccaaggcagttactccgttcaattcagtgaaggctgagagaaatgaggaagctacagaagaaaagtttgcagccagcagagtttggttcttaagatctaaggaaagaagtaatgtccagaacagaaaagtgcaaggtgatgcagcaactggtaaggtagaagcttcagcaagttattcaggtatagctaagataattcatgaaggtgaacgaaggtggctacactaaacaacatattttcaatgtagaccaaacatccttctattggaggaaaatgccatctaggaatttaatagctaaagatgaaaaatcaatgcctgtttaaatcttcaaagaacagtctgactctctttttaggagctaatgtagctggtgactttaagttgaagccaatgttcattgactatcctgaaaattctaaggtccttattctcagcaaactatcgcaaggacaaaaaaccaaacaccacatgttctcactcataattgggaactgaacaatgaaacacatggacacaggaaggggaacatcacacaccagggactgttgtggtgggggcggggagggatagcattaggagatgtacctaatgctaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatgcatatgtaacaaacctgcacgttgcgcacatgtaccctaaaacttaaagtataataaaaaaaaggaaataagctcaatctactctgcctgtgctctataaataaaataacaaagcttggatgtcagcacatttgtttacaacatagtttaccaaatactttaagcccactcttgagacctactgctcagaaaaaaagatttctttcaaaatatcactgctcattgacaatgcaccaagtcactcacataagagctctgatgaagatgtacaaggagattaatttaatgctgttttcatgactgctaacacagcatccattctgcagcccatgcttcaaagagtattttcaactttcaagtgttatgatttaagaaatatatttttatatatttatgaagtatagctgccatagatggtgattcctctgataaatctgggcaaaataaattgtaaacctaggattcaccatcctagatgtcattaagaacactgttgattgatgggaggaggtcaaaatataaacattaaaagaaatttggaagaagttgattctaaccaccatggatgaccttgccggattcaagaattcaatggaagaagtaactgcagatgtgttggaaataataaaagaactagaattagaagtggcgcctcaagaagtgactacattgctgcaatctcatgacaaaagttgaatgaatgagaagttgcttatagataagtgaagtggtttcttgagatggaatctacacctgataaagatgctatgaatattgttgaactggcaacaaaagatttggactattacataaacttatttaatgaagcagaagcagaggcagtgtttaagaagactgacttcatttagaagttctaccatgtgtaaaatgccatgaaatagcatcataagctacagatacatttttctgaaggaagagtaaattgatgtggccaacttccttgttgtcctattctaacaaattgccacagtcaccccaacttacagcaaccacccttctggtcagacagcagtcatcaacatcaaagcaagacctcccaccagcaaaaagtatcactagttgaaggctcag</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(AS)]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG040339]][[Category:Transcripts]] |
Latest revision as of 01:18, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101361 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2023 nt |
Genomic location |
chr5+:45574692..45576714 |
Exon number |
1 |
Exons |
45574692..45576714 |
Genome context |
|
Sequence |
000001 aagagtcaca catctctcac gttaaatcaa aagttagaaa tgattgagct tagtgacaaa ggcatgttga aggccaaaac 000080
000081 agaccaaaat ctacgtttct tatgccaaac agttagccaa gttgtgaatg caaaggaaaa gttcttgaag gaaattaaaa 000160 000161 aggctacttc agtgaacaca ggagtgataa gaaagagaaa cagccttgct gttgatgtgg agaaagtttg agtggtctgg 000240 000241 atagaagatc aaatcaccca cagcattccc taagccaagt cctaatccag accaaggcag ttactccgtt caattcagtg 000320 000321 aaggctgaga gaaatgagga agctacagaa gaaaagtttg cagccagcag agtttggttc ttaagatcta aggaaagaag 000400 000401 taatgtccag aacagaaaag tgcaaggtga tgcagcaact ggtaaggtag aagcttcagc aagttattca ggtatagcta 000480 000481 agataattca tgaaggtgaa cgaaggtggc tacactaaac aacatatttt caatgtagac caaacatcct tctattggag 000560 000561 gaaaatgcca tctaggaatt taatagctaa agatgaaaaa tcaatgcctg tttaaatctt caaagaacag tctgactctc 000640 000641 tttttaggag ctaatgtagc tggtgacttt aagttgaagc caatgttcat tgactatcct gaaaattcta aggtccttat 000720 000721 tctcagcaaa ctatcgcaag gacaaaaaac caaacaccac atgttctcac tcataattgg gaactgaaca atgaaacaca 000800 000801 tggacacagg aaggggaaca tcacacacca gggactgttg tggtgggggc ggggagggat agcattagga gatgtaccta 000880 000881 atgctaaatg acgagttaat gggtgcagca caccaacatg gcacatgtat gcatatgtaa caaacctgca cgttgcgcac 000960 000961 atgtacccta aaacttaaag tataataaaa aaaaggaaat aagctcaatc tactctgcct gtgctctata aataaaataa 001040 001041 caaagcttgg atgtcagcac atttgtttac aacatagttt accaaatact ttaagcccac tcttgagacc tactgctcag 001120 001121 aaaaaaagat ttctttcaaa atatcactgc tcattgacaa tgcaccaagt cactcacata agagctctga tgaagatgta 001200 001201 caaggagatt aatttaatgc tgttttcatg actgctaaca cagcatccat tctgcagccc atgcttcaaa gagtattttc 001280 001281 aactttcaag tgttatgatt taagaaatat atttttatat atttatgaag tatagctgcc atagatggtg attcctctga 001360 001361 taaatctggg caaaataaat tgtaaaccta ggattcacca tcctagatgt cattaagaac actgttgatt gatgggagga 001440 001441 ggtcaaaata taaacattaa aagaaatttg gaagaagttg attctaacca ccatggatga ccttgccgga ttcaagaatt 001520 001521 caatggaaga agtaactgca gatgtgttgg aaataataaa agaactagaa ttagaagtgg cgcctcaaga agtgactaca 001600 001601 ttgctgcaat ctcatgacaa aagttgaatg aatgagaagt tgcttataga taagtgaagt ggtttcttga gatggaatct 001680 001681 acacctgata aagatgctat gaatattgtt gaactggcaa caaaagattt ggactattac ataaacttat ttaatgaagc 001760 001761 agaagcagag gcagtgttta agaagactga cttcatttag aagttctacc atgtgtaaaa tgccatgaaa tagcatcata 001840 001841 agctacagat acatttttct gaaggaagag taaattgatg tggccaactt ccttgttgtc ctattctaac aaattgccac 001920 001921 agtcacccca acttacagca accacccttc tggtcagaca gcagtcatca acatcaaagc aagacctccc accagcaaaa 002000 002001 agtatcacta gttgaaggct cag |
Predicted Small Protein
Name | NONHSAT101361_smProtein_1877:2014 |
Length | 46 |
Molecular weight | 4931.5757 |
Aromaticity | 0.0444444444444 |
Instability index | 90.5 |
Isoelectric point | 9.99615478516 |
Runs | 6 |
Runs residual | 0.0289141414141 |
Runs probability | 0.0229935818171 |
Amino acid sequence | MWPTSLLSYSNKLPQSPQLTATTLLVRQQSSTSKQDLPPAKSITS |
Secondary structure | LLLLHHHHLLLLLLLLLLLLLEEEEHHHLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |