Difference between revisions of "NONHSAT117584"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>AGGAAATTTCTGGTGGGCCTTCGCGGCTCCGCTGGGTTGGCAGCCGCTTGAGCCACTGCGAGGAAAGCAAAGTCTGGGCCATGGAGATGAGCCTAGTCCTGCTGTTCCTGATCCGCACTGCCCTTTTTGCACCCCAGGGAGCTGCTGCTGacggcgcctccctctgtcgccaaagttggagtgcagtggcgcggtctcggctcactgcaagctccgcctcccggattcaagtgattcccctgccttagcctcctaagtagctgggattacaagtgcccaccaccacacccggctaatattttgtattttaatagagactgggtttcaccatgttgaccgggatggtctcaatctcctgacctcgtgatctgcctgcctaagcctcccgaagtgctgggattacaggcgtgagccaccacacctagctg</dnaseq>| | sequence = <dnaseq>AGGAAATTTCTGGTGGGCCTTCGCGGCTCCGCTGGGTTGGCAGCCGCTTGAGCCACTGCGAGGAAAGCAAAGTCTGGGCCATGGAGATGAGCCTAGTCCTGCTGTTCCTGATCCGCACTGCCCTTTTTGCACCCCAGGGAGCTGCTGCTGacggcgcctccctctgtcgccaaagttggagtgcagtggcgcggtctcggctcactgcaagctccgcctcccggattcaagtgattcccctgccttagcctcctaagtagctgggattacaagtgcccaccaccacacccggctaatattttgtattttaatagagactgggtttcaccatgttgaccgggatggtctcaatctcctgacctcgtgatctgcctgcctaagcctcccgaagtgctgggattacaggcgtgagccaccacacctagctg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG046192]][[Category:Transcripts]] |
Latest revision as of 06:18, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT117584 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
428 nt |
| Genomic location |
chr6_mcf_hap5-:1015472..1017360 |
| Exon number |
2 |
| Exons |
1015472..1015749,1017211..1017360 |
| Genome context |
|
| Sequence |
000001 AGGAAATTTC TGGTGGGCCT TCGCGGCTCC GCTGGGTTGG CAGCCGCTTG AGCCACTGCG AGGAAAGCAA AGTCTGGGCC 000080
000081 ATGGAGATGA GCCTAGTCCT GCTGTTCCTG ATCCGCACTG CCCTTTTTGC ACCCCAGGGA GCTGCTGCTG acggcgcctc 000160 000161 cctctgtcgc caaagttgga gtgcagtggc gcggtctcgg ctcactgcaa gctccgcctc ccggattcaa gtgattcccc 000240 000241 tgccttagcc tcctaagtag ctgggattac aagtgcccac caccacaccc ggctaatatt ttgtatttta atagagactg 000320 000321 ggtttcacca tgttgaccgg gatggtctca atctcctgac ctcgtgatct gcctgcctaa gcctcccgaa gtgctgggat 000400 000401 tacaggcgtg agccaccaca cctagctg |
Predicted Small Protein
| Name | NONHSAT117584_smProtein_80:247 |
| Length | 56 |
| Molecular weight | 5830.8052 |
| Aromaticity | 0.0545454545455 |
| Instability index | 51.7727272727 |
| Isoelectric point | 11.4000854492 |
| Runs | 11 |
| Runs residual | 0.0484848484848 |
| Runs probability | 0.0322461498933 |
| Amino acid sequence | MEMSLVLLFLIRTALFAPQGAAADGASLCRQSWSAVARSRLTASSASRIQVIPLP |
| Secondary structure | LLHHHHHHHHHHHHHHLLLHHHHLLHHHHHHLHHHHHHHHHHHLLLLLEEEELLL |
| PRMN | - |
| PiMo | - |
