Difference between revisions of "NONHSAT122935"

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sequence = <dnaseq>AGTTGGGAAGTTATGACACAAACATTGGACATCTCTGACATATTTTTTCTCGTTTTCAGCTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTATGATTGACATTTTCTGCTCGGCAGAGTTCAGGGACTGGAATTGCAAGAGTATTTTCATGCGTGTTGAAGATGAACTGGAAATCCCTCCggcacctcaatctcaacatttccaaaactgaactcatcacccctcttcccccaccaccaaaactgctcctcctcctgtattcctgacctccgccatccaccccgttgctcaagccggaaactcggcagcccttccaaactcttccctctctcactccccacatcccatcgtctcggccttcaca</dnaseq>|
 
sequence = <dnaseq>AGTTGGGAAGTTATGACACAAACATTGGACATCTCTGACATATTTTTTCTCGTTTTCAGCTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTATGATTGACATTTTCTGCTCGGCAGAGTTCAGGGACTGGAATTGCAAGAGTATTTTCATGCGTGTTGAAGATGAACTGGAAATCCCTCCggcacctcaatctcaacatttccaaaactgaactcatcacccctcttcccccaccaccaaaactgctcctcctcctgtattcctgacctccgccatccaccccgttgctcaagccggaaactcggcagcccttccaaactcttccctctctcactccccacatcccatcgtctcggccttcaca</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG048618]][[Category:Transcripts]]

Latest revision as of 06:44, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT122935

Source

NONCODE4.0

Same with

,

Classification

sense

Length

565 nt

Genomic location

chr7+:116859079..116863187

Exon number

3

Exons

116859079..116859230,116861977..116862116,116862915..116863187

Genome context

Sequence
000001 AGTTGGGAAG TTATGACACA AACATTGGAC ATCTCTGACA TATTTTTTCT CGTTTTCAGC TTTTCGGATG ATCCCTTATC 000080
000081 CCTTGGAAAA GGGGCACCTA TTTTATCCTT ACCCAATCTG TACAGAAACA GCAGACCGAG AGCTGCTTCC ATCTTTCCAT 000160
000161 GAAGTCTCAG TTTACCCAAA GAAGGAGCTT CCCTTCTTTA TTCTCTTTAC TGCTGGATTA TGTTCCTTCA CAGCCATGCT 000240
000241 GGCCCTCCTG ACACATCAGT TCCCGGAACT TATGGGGGTC TTCGCAAAAG CTATGATTGA CATTTTCTGC TCGGCAGAGT 000320
000321 TCAGGGACTG GAATTGCAAG AGTATTTTCA TGCGTGTTGA AGATGAACTG GAAATCCCTC Cggcacctca atctcaacat 000400
000401 ttccaaaact gaactcatca cccctcttcc cccaccacca aaactgctcc tcctcctgta ttcctgacct ccgccatcca 000480
000481 ccccgttgct caagccggaa actcggcagc ccttccaaac tcttccctct ctcactcccc acatcccatc gtctcggcct 000560
000561 tcaca
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Predicted Small Protein

Name NONHSAT122935_smProtein_362:466
Length 35
Molecular weight 3954.765
Aromaticity 0.0588235294118
Instability index 56.7352941176
Isoelectric point 9.99627685547
Runs 6
Runs residual 0.00967982129561
Runs probability 0.0340929164458
Amino acid sequence MNWKSLRHLNLNISKTELITPLPPPPKLLLLLYS
Secondary structure LLHHHHHHHLLLLLLLLLLLLLLLLHHHHEEELL
PRMN -
PiMo -