Difference between revisions of "NONHSAT143724"
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sequence = <dnaseq>GCCTTTTGCCCACCCCTCACCCCCAGCCCCTGCACCCTCTGGACTTGGGCGGCCTCCTGGGTTTATGTGCCCCCGGGCCCCACACCCCAATCCACCCCAGCCACTGACTCAGAGTCCTCAAGAGCACAGGGACCCAAGGAGATACAGCCACCATGTCCCAGCACCCTGGGCTCAGAAGGGGACAGACACTCCCTTGGGTACACAACGGTCAGGGGAGGGGGCTGAGGGCACTGCAGTGGCACCTCAGGACACCATCAACTGCCGGCTGTTCTGGGGAGGATGCCAACTCCAGCTCCGAGGCCTGGCAGGTGTCCCTGCAGATCAGAGAGGTCCTGCCCATGTGGTGGGGGGGACCCTGGGTGGTGGGCAGGCTAGAGTTGGGGGGAAGtttaaaacaatttttattaatatataaatagagacttgggtctcactatgcggcccgactggccttgaagtttggcctcaagtgatcctcctgcctcagcctcccaaagtgctaggattacaCAGCCCTCGCCCCTCGGGTCCCTTCTGCCCTTGTGGGAGTTGCCAGTCCTCCTATCCTCCCAGTACAAAGCTGGCTTCCACTTCTGCGGGGGCTACCACATCAGCGAGGACTGGGTGGTCACCGCTGCCCACCAGGGGTCAGGAAAAGGGTCGGAAATGAACTGCAGGCTGGGGAACCAGCACCCCCATCCCCCGGCCACAGGCAGAGCCGCCTCTGCAGGTGACACCCACCCCAGGCCGTGCACCCCACCTCCACCCTCGCAGGCCACCCAGACGGCagcttggggaaacctgggaggtcccgtaccctcactgtgcagGCACCCCCATGAGCCCAGGCACCGCCTGCCACCCTCACTCTCCAGGAAGAGCCACCGCGTGGTGGCCGGGATCGTGTGGTGGCCAGGGCGTCTGACCTTGGCTCTCACCCGGAGGCCATCCAGGTGCTGAGGATGGCTAACGCTAAGGCCACACAGCCAGGGAGAGGAGGTGGCTCGTGACACCACGATGGGACACACCCACCTCTGGGAGAGGAGGGTGACTCCGACAGCCCTTGCCTGCCAGGATGGAGCCTGGACTCTGGAGGGCATCGTGTCCTGGAGCAGCACCAGCACCTCCTGTTGTCACCAGGCGTGGATGCCCGCATCATGAAATTCATGCCTGGGAAGGCGTGGAGGCCGAGACCACCCCCCCTACCCCGCATCTGTGTAAAACACAAATAAAGCCATTGAGAGCAACTGCA</dnaseq>| | sequence = <dnaseq>GCCTTTTGCCCACCCCTCACCCCCAGCCCCTGCACCCTCTGGACTTGGGCGGCCTCCTGGGTTTATGTGCCCCCGGGCCCCACACCCCAATCCACCCCAGCCACTGACTCAGAGTCCTCAAGAGCACAGGGACCCAAGGAGATACAGCCACCATGTCCCAGCACCCTGGGCTCAGAAGGGGACAGACACTCCCTTGGGTACACAACGGTCAGGGGAGGGGGCTGAGGGCACTGCAGTGGCACCTCAGGACACCATCAACTGCCGGCTGTTCTGGGGAGGATGCCAACTCCAGCTCCGAGGCCTGGCAGGTGTCCCTGCAGATCAGAGAGGTCCTGCCCATGTGGTGGGGGGGACCCTGGGTGGTGGGCAGGCTAGAGTTGGGGGGAAGtttaaaacaatttttattaatatataaatagagacttgggtctcactatgcggcccgactggccttgaagtttggcctcaagtgatcctcctgcctcagcctcccaaagtgctaggattacaCAGCCCTCGCCCCTCGGGTCCCTTCTGCCCTTGTGGGAGTTGCCAGTCCTCCTATCCTCCCAGTACAAAGCTGGCTTCCACTTCTGCGGGGGCTACCACATCAGCGAGGACTGGGTGGTCACCGCTGCCCACCAGGGGTCAGGAAAAGGGTCGGAAATGAACTGCAGGCTGGGGAACCAGCACCCCCATCCCCCGGCCACAGGCAGAGCCGCCTCTGCAGGTGACACCCACCCCAGGCCGTGCACCCCACCTCCACCCTCGCAGGCCACCCAGACGGCagcttggggaaacctgggaggtcccgtaccctcactgtgcagGCACCCCCATGAGCCCAGGCACCGCCTGCCACCCTCACTCTCCAGGAAGAGCCACCGCGTGGTGGCCGGGATCGTGTGGTGGCCAGGGCGTCTGACCTTGGCTCTCACCCGGAGGCCATCCAGGTGCTGAGGATGGCTAACGCTAAGGCCACACAGCCAGGGAGAGGAGGTGGCTCGTGACACCACGATGGGACACACCCACCTCTGGGAGAGGAGGGTGACTCCGACAGCCCTTGCCTGCCAGGATGGAGCCTGGACTCTGGAGGGCATCGTGTCCTGGAGCAGCACCAGCACCTCCTGTTGTCACCAGGCGTGGATGCCCGCATCATGAAATTCATGCCTGGGAAGGCGTGGAGGCCGAGACCACCCCCCCTACCCCGCATCTGTGTAAAACACAAATAAAGCCATTGAGAGCAACTGCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG019998]] | + | [[Category:Intergenic]][[Category:NONHSAG019998]][[Category:Transcripts]] |
Latest revision as of 03:10, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT143724 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1252 nt |
| Genomic location |
chr16+:75259972..75262093 |
| Exon number |
4 |
| Exons |
75259972..75260623,75260718..75260895,75260989..75261204,75261888..75262093 |
| Genome context |
|
| Sequence |
000001 GCCTTTTGCC CACCCCTCAC CCCCAGCCCC TGCACCCTCT GGACTTGGGC GGCCTCCTGG GTTTATGTGC CCCCGGGCCC 000080
000081 CACACCCCAA TCCACCCCAG CCACTGACTC AGAGTCCTCA AGAGCACAGG GACCCAAGGA GATACAGCCA CCATGTCCCA 000160 000161 GCACCCTGGG CTCAGAAGGG GACAGACACT CCCTTGGGTA CACAACGGTC AGGGGAGGGG GCTGAGGGCA CTGCAGTGGC 000240 000241 ACCTCAGGAC ACCATCAACT GCCGGCTGTT CTGGGGAGGA TGCCAACTCC AGCTCCGAGG CCTGGCAGGT GTCCCTGCAG 000320 000321 ATCAGAGAGG TCCTGCCCAT GTGGTGGGGG GGACCCTGGG TGGTGGGCAG GCTAGAGTTG GGGGGAAGtt taaaacaatt 000400 000401 tttattaata tataaataga gacttgggtc tcactatgcg gcccgactgg ccttgaagtt tggcctcaag tgatcctcct 000480 000481 gcctcagcct cccaaagtgc taggattaca CAGCCCTCGC CCCTCGGGTC CCTTCTGCCC TTGTGGGAGT TGCCAGTCCT 000560 000561 CCTATCCTCC CAGTACAAAG CTGGCTTCCA CTTCTGCGGG GGCTACCACA TCAGCGAGGA CTGGGTGGTC ACCGCTGCCC 000640 000641 ACCAGGGGTC AGGAAAAGGG TCGGAAATGA ACTGCAGGCT GGGGAACCAG CACCCCCATC CCCCGGCCAC AGGCAGAGCC 000720 000721 GCCTCTGCAG GTGACACCCA CCCCAGGCCG TGCACCCCAC CTCCACCCTC GCAGGCCACC CAGACGGCag cttggggaaa 000800 000801 cctgggaggt cccgtaccct cactgtgcag GCACCCCCAT GAGCCCAGGC ACCGCCTGCC ACCCTCACTC TCCAGGAAGA 000880 000881 GCCACCGCGT GGTGGCCGGG ATCGTGTGGT GGCCAGGGCG TCTGACCTTG GCTCTCACCC GGAGGCCATC CAGGTGCTGA 000960 000961 GGATGGCTAA CGCTAAGGCC ACACAGCCAG GGAGAGGAGG TGGCTCGTGA CACCACGATG GGACACACCC ACCTCTGGGA 001040 001041 GAGGAGGGTG ACTCCGACAG CCCTTGCCTG CCAGGATGGA GCCTGGACTC TGGAGGGCAT CGTGTCCTGG AGCAGCACCA 001120 001121 GCACCTCCTG TTGTCACCAG GCGTGGATGC CCGCATCATG AAATTCATGC CTGGGAAGGC GTGGAGGCCG AGACCACCCC 001200 001201 CCCTACCCCG CATCTGTGTA AAACACAAAT AAAGCCATTG AGAGCAACTG CA |
Predicted Small Protein
| Name | NONHSAT143724_smProtein_152:418 |
| Length | 89 |
| Molecular weight | 9863.1667 |
| Aromaticity | 0.0909090909091 |
| Instability index | 50.6613636364 |
| Isoelectric point | 10.2557983398 |
| Runs | 12 |
| Runs residual | 0.005 |
| Runs probability | 0.0497850791969 |
| Amino acid sequence | MSQHPGLRRGQTLPWVHNGQGRGLRALQWHLRTPSTAGCSGEDANSSSEAWQVSLQIREV LPMWWGGPWVVGRLELGGSLKQFLLIYK |
| Secondary structure | LLLLLLLLLLLLLLEELLLLLHHHHHHHHHHLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HLLLLLLLEEEEEEEELLLHHHEEEEEL |
| PRMN | - |
| PiMo | - |
