Difference between revisions of "NONHSAT011178"
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sequence = <dnaseq>gccgtatgaattatatctcaacattgtattagaaaataaaattaatgaagcatagaagttacggagaactactggaaagaagaaatacaagaactcaaggaagagacagccagacaacagtagagtgtgaaatgggaaccagcagaaaaaaagaaatagagaaaaatgatcaagccatttcagaagtacacaagggagactagacaccatggcaaagatcataaaagtagaaatgaaaTTTTATGTTTTTGAGACAGTGTCCTTGAGTTCAGACTCTCTCTTCCAGAGGGCAGTTTCACTCCTCCATACTTCTTACTTGGACTCTTCATCTGAGCATGGTTTTCAGTACAGTCAAGTGACTTTGGTGAAAAATGACATTTTCTTAAATGAGTACAAAACTTTTTACCAACAAAAAAAAGCAAGTAGTTATACTCAGGAAGAACTTCAAGACACTTACGGGTTTCTTCTGTTTGATACTGAAAAGCAGGCAAAATTGGTATGTCAGTGTGGACTCCGTGTTGGCAGCAGTGCTGTTACCACTCTGGGTGATCCAGCCAAAG</dnaseq>| | sequence = <dnaseq>gccgtatgaattatatctcaacattgtattagaaaataaaattaatgaagcatagaagttacggagaactactggaaagaagaaatacaagaactcaaggaagagacagccagacaacagtagagtgtgaaatgggaaccagcagaaaaaaagaaatagagaaaaatgatcaagccatttcagaagtacacaagggagactagacaccatggcaaagatcataaaagtagaaatgaaaTTTTATGTTTTTGAGACAGTGTCCTTGAGTTCAGACTCTCTCTTCCAGAGGGCAGTTTCACTCCTCCATACTTCTTACTTGGACTCTTCATCTGAGCATGGTTTTCAGTACAGTCAAGTGACTTTGGTGAAAAATGACATTTTCTTAAATGAGTACAAAACTTTTTACCAACAAAAAAAAGCAAGTAGTTATACTCAGGAAGAACTTCAAGACACTTACGGGTTTCTTCTGTTTGATACTGAAAAGCAGGCAAAATTGGTATGTCAGTGTGGACTCCGTGTTGGCAGCAGTGCTGTTACCACTCTGGGTGATCCAGCCAAAG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG005113]] | + | [[Category:Sense]][[Category:NONHSAG005113]][[Category:Transcripts]] |
Latest revision as of 20:02, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011178 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
560 nt |
Genomic location |
chr10+:5741456..5756170 |
Exon number |
4 |
Exons |
5741456..5741700,5754357..5754502,5754786..5754881,5756098..5756170 |
Genome context |
|
Sequence |
000001 gccgtatgaa ttatatctca acattgtatt agaaaataaa attaatgaag catagaagtt acggagaact actggaaaga 000080
000081 agaaatacaa gaactcaagg aagagacagc cagacaacag tagagtgtga aatgggaacc agcagaaaaa aagaaataga 000160 000161 gaaaaatgat caagccattt cagaagtaca caagggagac tagacaccat ggcaaagatc ataaaagtag aaatgaaaTT 000240 000241 TTATGTTTTT GAGACAGTGT CCTTGAGTTC AGACTCTCTC TTCCAGAGGG CAGTTTCACT CCTCCATACT TCTTACTTGG 000320 000321 ACTCTTCATC TGAGCATGGT TTTCAGTACA GTCAAGTGAC TTTGGTGAAA AATGACATTT TCTTAAATGA GTACAAAACT 000400 000401 TTTTACCAAC AAAAAAAAGC AAGTAGTTAT ACTCAGGAAG AACTTCAAGA CACTTACGGG TTTCTTCTGT TTGATACTGA 000480 000481 AAAGCAGGCA AAATTGGTAT GTCAGTGTGG ACTCCGTGTT GGCAGCAGTG CTGTTACCAC TCTGGGTGAT CCAGCCAAAG 000560 |
Predicted Small Protein
Name | NONHSAT011178_smProtein_44:202 |
Length | 53 |
Molecular weight | 6064.6349 |
Aromaticity | 0.0192307692308 |
Instability index | 62.1884615385 |
Isoelectric point | 7.93157958984 |
Runs | 10 |
Runs residual | 0.041938287701 |
Runs probability | 0.0389595477831 |
Amino acid sequence | MKHRSYGELLERRNTRTQGRDSQTTVECEMGTSRKKEIEKNDQAISEVHKGD |
Secondary structure | LLLLLHHHHHHLLLLLLLLLLLLLEEEEEELLLLHHHEELLLLLLEEEELLL |
PRMN | - |
PiMo | - |