Difference between revisions of "NONHSAT021618"
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sequence = <dnaseq>AACCTGAGATTCCGAGCCCAGGCATATAAGATGCAAGACTGAGAGTCCACAGTGCTATAACATTGAAATTAAAAGTCAGTGGTACCCGGTTCAAAAGAGCTGACTCCAAGATCCCAGACACTCATATCCTCAAGACTCTATAAATCTCTGATTCTGAAACGTGAAGGTGCCACAGAGCCTGTGATGCAGTGATTCCAGACCATCTGGGTTTCACTCTAGGAAGGCTTCTTGAAGGAGCAAACATCTGTCCTTCTCCTGCCCAGAGCTGCCAGGTCACAAGGACAGAACCAAGACTCTTGATACCTCTCTAAGTAGCAGGAGGGACAGCTGGGGCTGGGGGCTGGGGGGTTGTAGGGCACTAGAGTTTCTGTCCCCAGGCTAGATTAAGGCGAAGGCTCTGCTGGATTGGGATATGAACCTGGAATTTGATGGGAAATGCTAAGCCCTCTCTGCCTCCGGAGTTGTCCTCCCACCCTATTCAGCCTACCCAGGCCCCGGGAAATCCAGCCTCTTCTCCAGGCTCCTAAATGATGAGGTTGAGCCTTCACCCCTCCCCACCACCGCCTCTGCTTGCAGATTCCCAGCGGCATCGGGTCACAGATGAGGAGGTCCAGCAAAGCAGGTTCCAGATGCCACCCTTGGAGGAAGGTGAGTCAGGATGGGAAGGGGTGTGAATGGCAGTCCCACCTCCAGAGAGTAGCTCAGCTCAGCTTGAGACCTTCCAGCAGGaacctccctcaatgagtctttcctgactttcacaaatcctataggcagtaagtgctttctgaagtctgacttaaagccctcttgctgcaCTGCTTCTTTCGTCACCATTCTCCCTTTCCTGCCTTAGGACTTGAAGAGTTGCATGCCTCCCACATCCCAACTGCCAACCCTGGACACTGCATTACAGACCCGCCATCCCTGGGCCCTCAGTATCACCCGAGGAGCAACAGTGAGTCGAGCACCTCTTCAGGGGAGGATTACTGCAATAGTCCCAAAAGCAAGCTGCCTCCATGGAACCCCCAGGTGTTTTCTTCAGAGAGGAGTTCCTTCCTGGAGCAGCCCCCAAACTTGGAGCTGGCCGGCACCCAGCCAGCCTTTTCAGCAGGGCCCCCGGCTGATGACAGCTCCAGCACCTCATCCGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCCCCCTTCGGAGGAGCAGTTTGGCTGTCCAGGTGCCAATATCTGGGGAAGGGATGTGGGAGGGGGACAGAGAGGGACTGGGGAGTAAATGAGTGGGGAACTATTGGATGCATTCGCTCAAGGGGAAAAGGAGAAAGGAAGGGTAAAAGAAGAGAGGGAAAGTAACTTTTTAAAAAACAAAGCAAggccaggcatggtagctcaagcctgtaatcccagcacaaggcaggaggattgcttgaggccaggaatttacgactagccccgggaacatagcaagaccagtctctacaaaactaaaaactaaatattagccaagggtagcacgtgcctatagtcccagctcctcaggaggctgaggtgggaggatcgtgtgagcccaggagatccaggctgcagtgagctatgatcgtatcactgtgtatcatgcccctgcagggtcagagcaagaccctctttctacaagaaaacaaaCACAAGCACAACAAGAATATGAAGAGGTGGGGAAAATGGATGTGGACGGGATGGagaaatagtcaaacaggttgctttgataagaagtgagctccctgtcagtggaggcattcaagcagaagcagctggttggctccttgggggagactgtggtagcagaggggcttccaacattcaatCGTCCACCGTGTCGTGCAGTGTGCCATTGTGGAGACCATAGCCCTGAACCAGACAGACGAGGCTATTCCCTCAGTGCTGATGTTCTAGTCAGGGACATGGCCGGAAGCAAGATGATCAGATGGCTTCATGCAGCATCCCACGGGGATAGTGATGTGGAGCCAGAACCACTCAGCTCCGTCCTGTGGGGCAGCAGGGCAATGACTGGGTCTCCCACTAATCTGGGCCTCTCTGCCCACAGGGTCCCCCAGCCCTCAGCCTGACTCCACCGACAACGATGACTACGATGACATCAGCGCAGCCTAGGCCGGGGCCAGCCGAGGCTCCTGGGGTGGCTCTGACCCTCTGGCCTCCTGCTCTACCTACTCCCTTTCCCCTTTCCCACCCTCCCAGCTCACCTCCCCATGGAGCTGAGAGGCCTCCCTTGGAGAGATGGAAGGAAACGTTATACCTTGTACCCCTCGGTCTCCATCCATCAAGCCAAACCTGCTGCCACAGCCCTCCCCCGGCCCCAGATAGCAGCCCCAGGGAGGATgctgcctccaagaggtgtgagccctctgtctcggggatgaacaagcagagtctgggctacctcttgacagctggtggaggggagttggggagctggactggatgactctggaggccccttccaaACCTCAAGTGTCCGGCGCTTTGATTGCCTGAGTTTCTGACACTTCAGGGCCCAGAGGTCCTGCGAGGGGCAGAACTGGACCCCCATGCCAGTGCTGCTGCAGGAGGGCCCATATACTAGGGTCTGCTGAGCTGTTGTCACTGATCGGTGGGCGCTGGGGGGGTAGGGTAGCACACCAGCTGTCCCAGGCTTTGCTCCGGGCGGTAACTGCACTTGGGCAGGGAATATAGCCTTCCTGGGCACAACTAGCTGACAATGACAGGTTGACTGTGTACCCCCAACCAAGGAGCTGGGGCCCAAGGCCAGTCCTGCCCCAGAGACACTCCAAGTCCGCCAGGGGCACAGACCAGTTCTGCAGTGACTGTCCCTGGACAATGGGTCTTTATTCTGAGTTTCCTATGGTTTACAAAGAGGGCCCCAGCCCAGCCCCACCACAGATCCCAGAGATAGGGGCCCAGTCTCCATGGGGGCAAGGAGCATAGAGATGTTTTCCAGGAAGGGGCTCAGAAGCTGCACTAGGCCCCGAGTCCCCATGTGTCTCCTTGAATTGATGAGGATGCTCCTGGGAGGGATGCGTGACTATGTGGTGTTGCACCCGGGGCTGCAAACGTCTCCGTGCAGCCCCCAGAGAGAGGCCCATGGGCTCAGACCAGGCTTTGTTGTCCTGCTCTGAGTATCCTGAGATTAAACTGAATTGCTGAATG</dnaseq>| | sequence = <dnaseq>AACCTGAGATTCCGAGCCCAGGCATATAAGATGCAAGACTGAGAGTCCACAGTGCTATAACATTGAAATTAAAAGTCAGTGGTACCCGGTTCAAAAGAGCTGACTCCAAGATCCCAGACACTCATATCCTCAAGACTCTATAAATCTCTGATTCTGAAACGTGAAGGTGCCACAGAGCCTGTGATGCAGTGATTCCAGACCATCTGGGTTTCACTCTAGGAAGGCTTCTTGAAGGAGCAAACATCTGTCCTTCTCCTGCCCAGAGCTGCCAGGTCACAAGGACAGAACCAAGACTCTTGATACCTCTCTAAGTAGCAGGAGGGACAGCTGGGGCTGGGGGCTGGGGGGTTGTAGGGCACTAGAGTTTCTGTCCCCAGGCTAGATTAAGGCGAAGGCTCTGCTGGATTGGGATATGAACCTGGAATTTGATGGGAAATGCTAAGCCCTCTCTGCCTCCGGAGTTGTCCTCCCACCCTATTCAGCCTACCCAGGCCCCGGGAAATCCAGCCTCTTCTCCAGGCTCCTAAATGATGAGGTTGAGCCTTCACCCCTCCCCACCACCGCCTCTGCTTGCAGATTCCCAGCGGCATCGGGTCACAGATGAGGAGGTCCAGCAAAGCAGGTTCCAGATGCCACCCTTGGAGGAAGGTGAGTCAGGATGGGAAGGGGTGTGAATGGCAGTCCCACCTCCAGAGAGTAGCTCAGCTCAGCTTGAGACCTTCCAGCAGGaacctccctcaatgagtctttcctgactttcacaaatcctataggcagtaagtgctttctgaagtctgacttaaagccctcttgctgcaCTGCTTCTTTCGTCACCATTCTCCCTTTCCTGCCTTAGGACTTGAAGAGTTGCATGCCTCCCACATCCCAACTGCCAACCCTGGACACTGCATTACAGACCCGCCATCCCTGGGCCCTCAGTATCACCCGAGGAGCAACAGTGAGTCGAGCACCTCTTCAGGGGAGGATTACTGCAATAGTCCCAAAAGCAAGCTGCCTCCATGGAACCCCCAGGTGTTTTCTTCAGAGAGGAGTTCCTTCCTGGAGCAGCCCCCAAACTTGGAGCTGGCCGGCACCCAGCCAGCCTTTTCAGCAGGGCCCCCGGCTGATGACAGCTCCAGCACCTCATCCGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCCCCCTTCGGAGGAGCAGTTTGGCTGTCCAGGTGCCAATATCTGGGGAAGGGATGTGGGAGGGGGACAGAGAGGGACTGGGGAGTAAATGAGTGGGGAACTATTGGATGCATTCGCTCAAGGGGAAAAGGAGAAAGGAAGGGTAAAAGAAGAGAGGGAAAGTAACTTTTTAAAAAACAAAGCAAggccaggcatggtagctcaagcctgtaatcccagcacaaggcaggaggattgcttgaggccaggaatttacgactagccccgggaacatagcaagaccagtctctacaaaactaaaaactaaatattagccaagggtagcacgtgcctatagtcccagctcctcaggaggctgaggtgggaggatcgtgtgagcccaggagatccaggctgcagtgagctatgatcgtatcactgtgtatcatgcccctgcagggtcagagcaagaccctctttctacaagaaaacaaaCACAAGCACAACAAGAATATGAAGAGGTGGGGAAAATGGATGTGGACGGGATGGagaaatagtcaaacaggttgctttgataagaagtgagctccctgtcagtggaggcattcaagcagaagcagctggttggctccttgggggagactgtggtagcagaggggcttccaacattcaatCGTCCACCGTGTCGTGCAGTGTGCCATTGTGGAGACCATAGCCCTGAACCAGACAGACGAGGCTATTCCCTCAGTGCTGATGTTCTAGTCAGGGACATGGCCGGAAGCAAGATGATCAGATGGCTTCATGCAGCATCCCACGGGGATAGTGATGTGGAGCCAGAACCACTCAGCTCCGTCCTGTGGGGCAGCAGGGCAATGACTGGGTCTCCCACTAATCTGGGCCTCTCTGCCCACAGGGTCCCCCAGCCCTCAGCCTGACTCCACCGACAACGATGACTACGATGACATCAGCGCAGCCTAGGCCGGGGCCAGCCGAGGCTCCTGGGGTGGCTCTGACCCTCTGGCCTCCTGCTCTACCTACTCCCTTTCCCCTTTCCCACCCTCCCAGCTCACCTCCCCATGGAGCTGAGAGGCCTCCCTTGGAGAGATGGAAGGAAACGTTATACCTTGTACCCCTCGGTCTCCATCCATCAAGCCAAACCTGCTGCCACAGCCCTCCCCCGGCCCCAGATAGCAGCCCCAGGGAGGATgctgcctccaagaggtgtgagccctctgtctcggggatgaacaagcagagtctgggctacctcttgacagctggtggaggggagttggggagctggactggatgactctggaggccccttccaaACCTCAAGTGTCCGGCGCTTTGATTGCCTGAGTTTCTGACACTTCAGGGCCCAGAGGTCCTGCGAGGGGCAGAACTGGACCCCCATGCCAGTGCTGCTGCAGGAGGGCCCATATACTAGGGTCTGCTGAGCTGTTGTCACTGATCGGTGGGCGCTGGGGGGGTAGGGTAGCACACCAGCTGTCCCAGGCTTTGCTCCGGGCGGTAACTGCACTTGGGCAGGGAATATAGCCTTCCTGGGCACAACTAGCTGACAATGACAGGTTGACTGTGTACCCCCAACCAAGGAGCTGGGGCCCAAGGCCAGTCCTGCCCCAGAGACACTCCAAGTCCGCCAGGGGCACAGACCAGTTCTGCAGTGACTGTCCCTGGACAATGGGTCTTTATTCTGAGTTTCCTATGGTTTACAAAGAGGGCCCCAGCCCAGCCCCACCACAGATCCCAGAGATAGGGGCCCAGTCTCCATGGGGGCAAGGAGCATAGAGATGTTTTCCAGGAAGGGGCTCAGAAGCTGCACTAGGCCCCGAGTCCCCATGTGTCTCCTTGAATTGATGAGGATGCTCCTGGGAGGGATGCGTGACTATGTGGTGTTGCACCCGGGGCTGCAAACGTCTCCGTGCAGCCCCCAGAGAGAGGCCCATGGGCTCAGACCAGGCTTTGTTGTCCTGCTCTGAGTATCCTGAGATTAAACTGAATTGCTGAATG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG008449]] | + | [[Category:Sense]][[Category:NONHSAG008449]][[Category:Transcripts]] |
Latest revision as of 20:34, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT021618 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3197 nt |
Genomic location |
chr11+:60784375..60787846 |
Exon number |
2 |
Exons |
60784375..60785485,60785761..60787846 |
Genome context |
|
Sequence |
000001 AACCTGAGAT TCCGAGCCCA GGCATATAAG ATGCAAGACT GAGAGTCCAC AGTGCTATAA CATTGAAATT AAAAGTCAGT 000080
000081 GGTACCCGGT TCAAAAGAGC TGACTCCAAG ATCCCAGACA CTCATATCCT CAAGACTCTA TAAATCTCTG ATTCTGAAAC 000160 000161 GTGAAGGTGC CACAGAGCCT GTGATGCAGT GATTCCAGAC CATCTGGGTT TCACTCTAGG AAGGCTTCTT GAAGGAGCAA 000240 000241 ACATCTGTCC TTCTCCTGCC CAGAGCTGCC AGGTCACAAG GACAGAACCA AGACTCTTGA TACCTCTCTA AGTAGCAGGA 000320 000321 GGGACAGCTG GGGCTGGGGG CTGGGGGGTT GTAGGGCACT AGAGTTTCTG TCCCCAGGCT AGATTAAGGC GAAGGCTCTG 000400 000401 CTGGATTGGG ATATGAACCT GGAATTTGAT GGGAAATGCT AAGCCCTCTC TGCCTCCGGA GTTGTCCTCC CACCCTATTC 000480 000481 AGCCTACCCA GGCCCCGGGA AATCCAGCCT CTTCTCCAGG CTCCTAAATG ATGAGGTTGA GCCTTCACCC CTCCCCACCA 000560 000561 CCGCCTCTGC TTGCAGATTC CCAGCGGCAT CGGGTCACAG ATGAGGAGGT CCAGCAAAGC AGGTTCCAGA TGCCACCCTT 000640 000641 GGAGGAAGGT GAGTCAGGAT GGGAAGGGGT GTGAATGGCA GTCCCACCTC CAGAGAGTAG CTCAGCTCAG CTTGAGACCT 000720 000721 TCCAGCAGGa acctccctca atgagtcttt cctgactttc acaaatccta taggcagtaa gtgctttctg aagtctgact 000800 000801 taaagccctc ttgctgcaCT GCTTCTTTCG TCACCATTCT CCCTTTCCTG CCTTAGGACT TGAAGAGTTG CATGCCTCCC 000880 000881 ACATCCCAAC TGCCAACCCT GGACACTGCA TTACAGACCC GCCATCCCTG GGCCCTCAGT ATCACCCGAG GAGCAACAGT 000960 000961 GAGTCGAGCA CCTCTTCAGG GGAGGATTAC TGCAATAGTC CCAAAAGCAA GCTGCCTCCA TGGAACCCCC AGGTGTTTTC 001040 001041 TTCAGAGAGG AGTTCCTTCC TGGAGCAGCC CCCAAACTTG GAGCTGGCCG GCACCCAGCC AGCCTTTTCA GCAGGGCCCC 001120 001121 CGGCTGATGA CAGCTCCAGC ACCTCATCCG GGGAGTGGTA CCAGAACTTC CAGCCACCAC CCCAGCCCCC TTCGGAGGAG 001200 001201 CAGTTTGGCT GTCCAGGTGC CAATATCTGG GGAAGGGATG TGGGAGGGGG ACAGAGAGGG ACTGGGGAGT AAATGAGTGG 001280 001281 GGAACTATTG GATGCATTCG CTCAAGGGGA AAAGGAGAAA GGAAGGGTAA AAGAAGAGAG GGAAAGTAAC TTTTTAAAAA 001360 001361 ACAAAGCAAg gccaggcatg gtagctcaag cctgtaatcc cagcacaagg caggaggatt gcttgaggcc aggaatttac 001440 001441 gactagcccc gggaacatag caagaccagt ctctacaaaa ctaaaaacta aatattagcc aagggtagca cgtgcctata 001520 001521 gtcccagctc ctcaggaggc tgaggtggga ggatcgtgtg agcccaggag atccaggctg cagtgagcta tgatcgtatc 001600 001601 actgtgtatc atgcccctgc agggtcagag caagaccctc tttctacaag aaaacaaaCA CAAGCACAAC AAGAATATGA 001680 001681 AGAGGTGGGG AAAATGGATG TGGACGGGAT GGagaaatag tcaaacaggt tgctttgata agaagtgagc tccctgtcag 001760 001761 tggaggcatt caagcagaag cagctggttg gctccttggg ggagactgtg gtagcagagg ggcttccaac attcaatCGT 001840 001841 CCACCGTGTC GTGCAGTGTG CCATTGTGGA GACCATAGCC CTGAACCAGA CAGACGAGGC TATTCCCTCA GTGCTGATGT 001920 001921 TCTAGTCAGG GACATGGCCG GAAGCAAGAT GATCAGATGG CTTCATGCAG CATCCCACGG GGATAGTGAT GTGGAGCCAG 002000 002001 AACCACTCAG CTCCGTCCTG TGGGGCAGCA GGGCAATGAC TGGGTCTCCC ACTAATCTGG GCCTCTCTGC CCACAGGGTC 002080 002081 CCCCAGCCCT CAGCCTGACT CCACCGACAA CGATGACTAC GATGACATCA GCGCAGCCTA GGCCGGGGCC AGCCGAGGCT 002160 002161 CCTGGGGTGG CTCTGACCCT CTGGCCTCCT GCTCTACCTA CTCCCTTTCC CCTTTCCCAC CCTCCCAGCT CACCTCCCCA 002240 002241 TGGAGCTGAG AGGCCTCCCT TGGAGAGATG GAAGGAAACG TTATACCTTG TACCCCTCGG TCTCCATCCA TCAAGCCAAA 002320 002321 CCTGCTGCCA CAGCCCTCCC CCGGCCCCAG ATAGCAGCCC CAGGGAGGAT gctgcctcca agaggtgtga gccctctgtc 002400 002401 tcggggatga acaagcagag tctgggctac ctcttgacag ctggtggagg ggagttgggg agctggactg gatgactctg 002480 002481 gaggcccctt ccaaACCTCA AGTGTCCGGC GCTTTGATTG CCTGAGTTTC TGACACTTCA GGGCCCAGAG GTCCTGCGAG 002560 002561 GGGCAGAACT GGACCCCCAT GCCAGTGCTG CTGCAGGAGG GCCCATATAC TAGGGTCTGC TGAGCTGTTG TCACTGATCG 002640 002641 GTGGGCGCTG GGGGGGTAGG GTAGCACACC AGCTGTCCCA GGCTTTGCTC CGGGCGGTAA CTGCACTTGG GCAGGGAATA 002720 002721 TAGCCTTCCT GGGCACAACT AGCTGACAAT GACAGGTTGA CTGTGTACCC CCAACCAAGG AGCTGGGGCC CAAGGCCAGT 002800 002801 CCTGCCCCAG AGACACTCCA AGTCCGCCAG GGGCACAGAC CAGTTCTGCA GTGACTGTCC CTGGACAATG GGTCTTTATT 002880 002881 CTGAGTTTCC TATGGTTTAC AAAGAGGGCC CCAGCCCAGC CCCACCACAG ATCCCAGAGA TAGGGGCCCA GTCTCCATGG 002960 002961 GGGCAAGGAG CATAGAGATG TTTTCCAGGA AGGGGCTCAG AAGCTGCACT AGGCCCCGAG TCCCCATGTG TCTCCTTGAA 003040 003041 TTGATGAGGA TGCTCCTGGG AGGGATGCGT GACTATGTGG TGTTGCACCC GGGGCTGCAA ACGTCTCCGT GCAGCCCCCA 003120 003121 GAGAGAGGCC CATGGGCTCA GACCAGGCTT TGTTGTCCTG CTCTGAGTAT CCTGAGATTA AACTGAATTG CTGAATG |
Predicted Small Protein
Name | NONHSAT021618_smProtein_1589:1747 |
Length | 53 |
Molecular weight | 6281.3699 |
Aromaticity | 0.115384615385 |
Instability index | 80.7788461538 |
Isoelectric point | 10.239440918 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0489116567548 |
Amino acid sequence | MIVSLCIMPLQGQSKTLFLQENKHKHNKNMKRWGKWMWTGWRNSQTGCFDKK |
Secondary structure | LEEEEEEELLLLLLEEEEELLLLHHHHHHHHHHHHHHHHLLLLLLLLEEELL |
PRMN | - |
PiMo | - |