Difference between revisions of "NONHSAT005851"

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sequence = <dnaseq>ATGAGAAGTGATCAGGGGGGCTTGGGGATGTTGGGAGTTGAGACTGATTTGATATCCCCAAACCTCCTGTACCAGGAGCAATTGTGGCTGCAGAGGGAGTGGAGGACAGGGGGTGGATAGAAGGAGACTCCAAGCTGAATAGCCAGAAAGAAATAAATGCTTTAGAATTCTCATGCTAAGCAAGTAGGGTTAATTTCTGCTGGTGGTTTCTACTCTGTGGTGCTCTTTTGTTGTTTCAGTAACCAGAACACATGATGTTTTAAAGAAGGCAAGGACTAACTTAGAGGTGAAATCCCTAAGGGCTCTGCCATGTACTCCAGCCTTGTGACCCTTGCCTTCCAGGAACCATGCAAGAAGCGCAGCCACCAGAAGTCCTTAAAACAGCAGGAAAGGTGGGCCTGTCCCCCTTTTGTGCAGCTACCTATCTGCTGAGGAGCATCTGGGCCTCATTCCTCCAAGTCCACGGGAGGGTCCAGAAGAGGGAGTCAGAGATGTATCCTGGTGGAGCTGGGAGAAAGGCAGAAAGCCTTTCTGACGGCTATGGAATACGATTAGCCAAGGTCCACTTGGCCCAGCACTAAGAAAAAGATGCGTAGTTTGCACAGAAGGTTTTGTGATCCTGCCTCTCAACAGCCCCAGCAGCTTGGGAACTAGCAAGAGCACATTTCTTGCCTCATCAGCTGTCCTGAGATGGAAAACTCAGTGAATATAGGACCCTGATTCCGATGAAAGGGGCACGTGGTCCCAATGCTGGAGCTCCTCTGGCAGGTTCTAAAAGCACACTACTGAGCAGCGGTGCCCTGCCGGACACTGCTGGCGGGGGCTCAGTGAGCACTACTC</dnaseq>|
 
sequence = <dnaseq>ATGAGAAGTGATCAGGGGGGCTTGGGGATGTTGGGAGTTGAGACTGATTTGATATCCCCAAACCTCCTGTACCAGGAGCAATTGTGGCTGCAGAGGGAGTGGAGGACAGGGGGTGGATAGAAGGAGACTCCAAGCTGAATAGCCAGAAAGAAATAAATGCTTTAGAATTCTCATGCTAAGCAAGTAGGGTTAATTTCTGCTGGTGGTTTCTACTCTGTGGTGCTCTTTTGTTGTTTCAGTAACCAGAACACATGATGTTTTAAAGAAGGCAAGGACTAACTTAGAGGTGAAATCCCTAAGGGCTCTGCCATGTACTCCAGCCTTGTGACCCTTGCCTTCCAGGAACCATGCAAGAAGCGCAGCCACCAGAAGTCCTTAAAACAGCAGGAAAGGTGGGCCTGTCCCCCTTTTGTGCAGCTACCTATCTGCTGAGGAGCATCTGGGCCTCATTCCTCCAAGTCCACGGGAGGGTCCAGAAGAGGGAGTCAGAGATGTATCCTGGTGGAGCTGGGAGAAAGGCAGAAAGCCTTTCTGACGGCTATGGAATACGATTAGCCAAGGTCCACTTGGCCCAGCACTAAGAAAAAGATGCGTAGTTTGCACAGAAGGTTTTGTGATCCTGCCTCTCAACAGCCCCAGCAGCTTGGGAACTAGCAAGAGCACATTTCTTGCCTCATCAGCTGTCCTGAGATGGAAAACTCAGTGAATATAGGACCCTGATTCCGATGAAAGGGGCACGTGGTCCCAATGCTGGAGCTCCTCTGGCAGGTTCTAAAAGCACACTACTGAGCAGCGGTGCCCTGCCGGACACTGCTGGCGGGGGCTCAGTGAGCACTACTC</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG002680]][[Category:Transcripts]]
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[[Category:Sense]][[Category:NONHSAG002680]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 19:38, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT005851

Source

NONCODE4.0

Same with

,

Classification

sense

Length

840 nt

Genomic location

chr1-:144851946..144854450

Exon number

2

Exons

144851946..144852499,144854165..144854450

Genome context

Sequence
000001 ATGAGAAGTG ATCAGGGGGG CTTGGGGATG TTGGGAGTTG AGACTGATTT GATATCCCCA AACCTCCTGT ACCAGGAGCA 000080
000081 ATTGTGGCTG CAGAGGGAGT GGAGGACAGG GGGTGGATAG AAGGAGACTC CAAGCTGAAT AGCCAGAAAG AAATAAATGC 000160
000161 TTTAGAATTC TCATGCTAAG CAAGTAGGGT TAATTTCTGC TGGTGGTTTC TACTCTGTGG TGCTCTTTTG TTGTTTCAGT 000240
000241 AACCAGAACA CATGATGTTT TAAAGAAGGC AAGGACTAAC TTAGAGGTGA AATCCCTAAG GGCTCTGCCA TGTACTCCAG 000320
000321 CCTTGTGACC CTTGCCTTCC AGGAACCATG CAAGAAGCGC AGCCACCAGA AGTCCTTAAA ACAGCAGGAA AGGTGGGCCT 000400
000401 GTCCCCCTTT TGTGCAGCTA CCTATCTGCT GAGGAGCATC TGGGCCTCAT TCCTCCAAGT CCACGGGAGG GTCCAGAAGA 000480
000481 GGGAGTCAGA GATGTATCCT GGTGGAGCTG GGAGAAAGGC AGAAAGCCTT TCTGACGGCT ATGGAATACG ATTAGCCAAG 000560
000561 GTCCACTTGG CCCAGCACTA AGAAAAAGAT GCGTAGTTTG CACAGAAGGT TTTGTGATCC TGCCTCTCAA CAGCCCCAGC 000640
000641 AGCTTGGGAA CTAGCAAGAG CACATTTCTT GCCTCATCAG CTGTCCTGAG ATGGAAAACT CAGTGAATAT AGGACCCTGA 000720
000721 TTCCGATGAA AGGGGCACGT GGTCCCAATG CTGGAGCTCC TCTGGCAGGT TCTAAAAGCA CACTACTGAG CAGCGGTGCC 000800
000801 CTGCCGGACA CTGCTGGCGG GGGCTCAGTG AGCACTACTC
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Predicted Small Protein

Name NONHSAT005851_smProtein_347:580
Length 78
Molecular weight 8424.6135
Aromaticity 0.0779220779221
Instability index 43.1181818182
Isoelectric point 9.57733154297
Runs 12
Runs residual 0.0197628458498
Runs probability 0.0416151445563
Amino acid sequence MQEAQPPEVLKTAGKVGLSPFCAATYLLRSIWASFLQVHGRVQKRESEMYPGGAGRKAES
LSDGYGIRLAKVHLAQH
Secondary structure LLLLLLHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHLEEELLLLLLLLLLLLLLEEE
LLLLLLEEEEHHHHHLL
PRMN -
PiMo -