Difference between revisions of "ENST00000428903.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CGGGACACTCACGGTTGAGCTGGCGCCTCCGGATCCTGTCCCTCCATGGCCTGTTTCTGATCCAGTGTAATCGCGAAGGATGGAGGAGGAAGCAATTGAAGGGAGATAAAGAAAGGAACAATAAGGGGTCTTTTCTCCTTGACATCTCTGCCAAGGCACCTTGACTCATGAGAGTGTCCAGCCTACTTGAGGAAAATTGTCCAAGAAGTCTAAAGGTTTCTTCCTTATGAGCTGGCTTGAGCAGGAAGTATGGTAGATACTCATTCATACCACAGGGTGTTGCCATGGAAATGGATCAAAGTAAGGTGATATCCGAAGAGAACAGTAGCTGCCACTTAGAGCCTCAGAGAGGGGAGAAAGCCTTAATGGAGACTTCACACTCTAAGGTGTGGTCCAGAGTGTGCCTACGACCCAAGGCACCAAGACAAGACCTATCACCAGGAACTACCTCGCGAACTAAGCAAAATCTCAACAGAACAATGTACACCCACATCCGAAAGAAAATATGCTGGCGTGTAAAAAAGGAAGAAAAACTACCAAGAAAAATTAAACATTTCAGTTAACTGGCCAACGTATT</dnaseq>| | sequence = <dnaseq>CGGGACACTCACGGTTGAGCTGGCGCCTCCGGATCCTGTCCCTCCATGGCCTGTTTCTGATCCAGTGTAATCGCGAAGGATGGAGGAGGAAGCAATTGAAGGGAGATAAAGAAAGGAACAATAAGGGGTCTTTTCTCCTTGACATCTCTGCCAAGGCACCTTGACTCATGAGAGTGTCCAGCCTACTTGAGGAAAATTGTCCAAGAAGTCTAAAGGTTTCTTCCTTATGAGCTGGCTTGAGCAGGAAGTATGGTAGATACTCATTCATACCACAGGGTGTTGCCATGGAAATGGATCAAAGTAAGGTGATATCCGAAGAGAACAGTAGCTGCCACTTAGAGCCTCAGAGAGGGGAGAAAGCCTTAATGGAGACTTCACACTCTAAGGTGTGGTCCAGAGTGTGCCTACGACCCAAGGCACCAAGACAAGACCTATCACCAGGAACTACCTCGCGAACTAAGCAAAATCTCAACAGAACAATGTACACCCACATCCGAAAGAAAATATGCTGGCGTGTAAAAAAGGAAGAAAAACTACCAAGAAAAATTAAACATTTCAGTTAACTGGCCAACGTATT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-LRRC16A-1]] |
Revision as of 06:02, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000428903.1 |
| Source |
Gencode19 |
| Same with |
lnc-LRRC16A-1:1,NONHSAT108131 |
| Classification |
intergenic |
| Length |
577 nt |
| Genomic location |
chr6+:25042067..25056892 |
| Exon number |
3 |
| Exons |
25042067..25042144,25055191..25055343,25056547..25056892 |
| Genome context |
|
| Sequence |
000001 CGGGACACTC ACGGTTGAGC TGGCGCCTCC GGATCCTGTC CCTCCATGGC CTGTTTCTGA TCCAGTGTAA TCGCGAAGGA 000080
000081 TGGAGGAGGA AGCAATTGAA GGGAGATAAA GAAAGGAACA ATAAGGGGTC TTTTCTCCTT GACATCTCTG CCAAGGCACC 000160 000161 TTGACTCATG AGAGTGTCCA GCCTACTTGA GGAAAATTGT CCAAGAAGTC TAAAGGTTTC TTCCTTATGA GCTGGCTTGA 000240 000241 GCAGGAAGTA TGGTAGATAC TCATTCATAC CACAGGGTGT TGCCATGGAA ATGGATCAAA GTAAGGTGAT ATCCGAAGAG 000320 000321 AACAGTAGCT GCCACTTAGA GCCTCAGAGA GGGGAGAAAG CCTTAATGGA GACTTCACAC TCTAAGGTGT GGTCCAGAGT 000400 000401 GTGCCTACGA CCCAAGGCAC CAAGACAAGA CCTATCACCA GGAACTACCT CGCGAACTAA GCAAAATCTC AACAGAACAA 000480 000481 TGTACACCCA CATCCGAAAG AAAATATGCT GGCGTGTAAA AAAGGAAGAA AAACTACCAA GAAAAATTAA ACATTTCAGT 000560 000561 TAACTGGCCA ACGTATT |
Predicted Small Protein
| Name | ENST00000428903.1_smProtein_284:562 |
| Length | 93 |
| Molecular weight | 10892.5331 |
| Aromaticity | 0.0434782608696 |
| Instability index | 61.1217391304 |
| Isoelectric point | 10.0834350586 |
| Runs | 15 |
| Runs residual | 0.0278385986863 |
| Runs probability | 0.0287463934523 |
| Amino acid sequence | MEMDQSKVISEENSSCHLEPQRGEKALMETSHSKVWSRVCLRPKAPRQDLSPGTTSRTKQ NLNRTMYTHIRKKICWRVKKEEKLPRKIKHFS |
| Secondary structure | LLLLLLEEELLLLLLLLLLLLLLHHHEEELLLLLEEEEEEELLLLLLLLLLLLLLLLLHH HHHHHHHHHHHHHHLLEEHHHHLLLHHHLLLL |
| PRMN | - |
| PiMo | - |
