Difference between revisions of "NONHSAT114280"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTGCCCAGGCTAGTCGAACTCCTGGGCTCAAGTCATCTGCCCACCTCTGCCTTCCAAGGTGCTGGGATTACAGGCATGAGGCACTGCGCCAGCCTTCAACCATGTTTTCATTTCTTTATTTTTGAGACATGGTCTCCATCTGTTGCCCAGGCTAGAGTGCAGTGATGCAATCATGGCTCACTGCAGCCTCTACCTTCTGGGCACAATTGATCCTCCGAATGAATGACCTTTGGGTCACAGGTCCACCGGCGACTCACCAGGGGTTTGTGCCCCTTCCTTCTTTCCTTCTCAGTGGAGTTTGAAGCACTTACGGGTGTCAAGGAAGCAAGTCTTATCGCCCCTTTCCACCTTCTATGAGTTTTCTTTGGCCATATTAGTTGTTAGGCCATAGAATATAAATGCTAAGAGTGTGGGCTCTAGACAGCCCAGATTCAAATCCCTGCTCTGCCTCTTACTAGATGTGCAACCTCAGGCAAACTTCGTAAACTCCCTGTGCCTCAGTATCTCCATCTATGCAATGGAGATAATGCAAGCCCTAGCTTCATAAAACCGTTGTGCAGATTAAAAGAT</dnaseq>| | sequence = <dnaseq>TTGCCCAGGCTAGTCGAACTCCTGGGCTCAAGTCATCTGCCCACCTCTGCCTTCCAAGGTGCTGGGATTACAGGCATGAGGCACTGCGCCAGCCTTCAACCATGTTTTCATTTCTTTATTTTTGAGACATGGTCTCCATCTGTTGCCCAGGCTAGAGTGCAGTGATGCAATCATGGCTCACTGCAGCCTCTACCTTCTGGGCACAATTGATCCTCCGAATGAATGACCTTTGGGTCACAGGTCCACCGGCGACTCACCAGGGGTTTGTGCCCCTTCCTTCTTTCCTTCTCAGTGGAGTTTGAAGCACTTACGGGTGTCAAGGAAGCAAGTCTTATCGCCCCTTTCCACCTTCTATGAGTTTTCTTTGGCCATATTAGTTGTTAGGCCATAGAATATAAATGCTAAGAGTGTGGGCTCTAGACAGCCCAGATTCAAATCCCTGCTCTGCCTCTTACTAGATGTGCAACCTCAGGCAAACTTCGTAAACTCCCTGTGCCTCAGTATCTCCATCTATGCAATGGAGATAATGCAAGCCCTAGCTTCATAAAACCGTTGTGCAGATTAAAAGAT</dnaseq>| | ||
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| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:Transcripts]] |
Latest revision as of 01:58, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT114280 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
570 nt |
| Genomic location |
chr6-:107301658..107342042 |
| Exon number |
3 |
| Exons |
107301658..107301856,107304202..107304356,107341827..107342042 |
| Genome context |
|
| Sequence |
000001 TTGCCCAGGC TAGTCGAACT CCTGGGCTCA AGTCATCTGC CCACCTCTGC CTTCCAAGGT GCTGGGATTA CAGGCATGAG 000080
000081 GCACTGCGCC AGCCTTCAAC CATGTTTTCA TTTCTTTATT TTTGAGACAT GGTCTCCATC TGTTGCCCAG GCTAGAGTGC 000160 000161 AGTGATGCAA TCATGGCTCA CTGCAGCCTC TACCTTCTGG GCACAATTGA TCCTCCGAAT GAATGACCTT TGGGTCACAG 000240 000241 GTCCACCGGC GACTCACCAG GGGTTTGTGC CCCTTCCTTC TTTCCTTCTC AGTGGAGTTT GAAGCACTTA CGGGTGTCAA 000320 000321 GGAAGCAAGT CTTATCGCCC CTTTCCACCT TCTATGAGTT TTCTTTGGCC ATATTAGTTG TTAGGCCATA GAATATAAAT 000400 000401 GCTAAGAGTG TGGGCTCTAG ACAGCCCAGA TTCAAATCCC TGCTCTGCCT CTTACTAGAT GTGCAACCTC AGGCAAACTT 000480 000481 CGTAAACTCC CTGTGCCTCA GTATCTCCAT CTATGCAATG GAGATAATGC AAGCCCTAGC TTCATAAAAC CGTTGTGCAG 000560 000561 ATTAAAAGAT |
Predicted Small Protein
| Name | NONHSAT114280_smProtein_164:301 |
| Length | 46 |
| Molecular weight | 4986.7659 |
| Aromaticity | 0.133333333333 |
| Instability index | 49.5733333333 |
| Isoelectric point | 6.49566650391 |
| Runs | 9 |
| Runs residual | 0.0377525252525 |
| Runs probability | 0.0221299731103 |
| Amino acid sequence | MQSWLTAASTFWAQLILRMNDLWVTGPPATHQGFVPLPSFLLSGV |
| Secondary structure | LLLHHHHHHHHHHHHHHHHLLLEELLLLLLLLLEELLLHHHHLLL |
| PRMN | - |
| PiMo | - |
