Difference between revisions of "NONHSAT138744"
| Line 42: | Line 42: | ||
sequence = <dnaseq>CAGCACCCCGTGTCTAGCTCAGGGTTTGTGAATGCACCAATCGACACTCCGTATCTAGCTAATCTAGTGGGGACGTGGAGAACTTTTGAGTCTACCTCAGGGATTATAGATGCACCAATCAACACCCTGTCAAAACGGACCAATCAGCGCTCTGTAAAACAGACCAATCAGCTCTCAGTAAAATGGACCAATCAGCAGGATGTGGGTGGGGCCAGATAAGGGAATAAAAGCAGGCTGCCGGACCCAGCAGTGGCAAGGCGCTTCGGTTGTCTTCCATGATGTGGACGCTTTGTTCTTTTGCTCTTTGCAATAAATCTTCCTGTTGCTTTCTTTGGGTCCACACTGCCTTTATGAGCTGTAACACTCACCGTGAAGGTCTGAAGCTTTACTCTGGAAGCCAGTGAGACCAGGAACCCACCGGGAGGAATGAACGACTCCAGACACACCGCCTTAAGATCTGTGACACTCACCGCGAAGGTCTGCAGCTTCATTCCTGATCCAGCGAGACCATGAACCCACCAGAAGGAAAAAACTCCGGACACATCCGAACGTCTAGAAGAAACAAACTCCAGACACACCGCCTGTAAGAACTGTAACGGTCACCGCGAGGGTCCGCGGTTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCATTTCTGGACACACTACCATGCCAGAGATCCAGGGGCTGCAGCATGCTGAAAGAAAACAGAAGCCTGTGGAGTGAGCCAAGATCAACCAGGAAATAAACCCTTTCCCTTGCGATGTCTCTCCAGCGCCCTCTACTGACATCAGAATTGTCTTTGCTGATCTCTTTATTATGATGAAAATTCTCTGGATGGAAGGGTCATCAGCTGCCGTCTCCTTTGCTACTCTGCTAGATATCCTTACAATTTGGTTTAGAATTTTAGTACCACTAACATTTTTTGGTGCATATTTTGGAAATAAAGAAAAGGTAAACTCTTAAAATACTG</dnaseq>| | sequence = <dnaseq>CAGCACCCCGTGTCTAGCTCAGGGTTTGTGAATGCACCAATCGACACTCCGTATCTAGCTAATCTAGTGGGGACGTGGAGAACTTTTGAGTCTACCTCAGGGATTATAGATGCACCAATCAACACCCTGTCAAAACGGACCAATCAGCGCTCTGTAAAACAGACCAATCAGCTCTCAGTAAAATGGACCAATCAGCAGGATGTGGGTGGGGCCAGATAAGGGAATAAAAGCAGGCTGCCGGACCCAGCAGTGGCAAGGCGCTTCGGTTGTCTTCCATGATGTGGACGCTTTGTTCTTTTGCTCTTTGCAATAAATCTTCCTGTTGCTTTCTTTGGGTCCACACTGCCTTTATGAGCTGTAACACTCACCGTGAAGGTCTGAAGCTTTACTCTGGAAGCCAGTGAGACCAGGAACCCACCGGGAGGAATGAACGACTCCAGACACACCGCCTTAAGATCTGTGACACTCACCGCGAAGGTCTGCAGCTTCATTCCTGATCCAGCGAGACCATGAACCCACCAGAAGGAAAAAACTCCGGACACATCCGAACGTCTAGAAGAAACAAACTCCAGACACACCGCCTGTAAGAACTGTAACGGTCACCGCGAGGGTCCGCGGTTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCATTTCTGGACACACTACCATGCCAGAGATCCAGGGGCTGCAGCATGCTGAAAGAAAACAGAAGCCTGTGGAGTGAGCCAAGATCAACCAGGAAATAAACCCTTTCCCTTGCGATGTCTCTCCAGCGCCCTCTACTGACATCAGAATTGTCTTTGCTGATCTCTTTATTATGATGAAAATTCTCTGGATGGAAGGGTCATCAGCTGCCGTCTCCTTTGCTACTCTGCTAGATATCCTTACAATTTGGTTTAGAATTTTAGTACCACTAACATTTTTTGGTGCATATTTTGGAAATAAAGAAAAGGTAAACTCTTAAAATACTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG055409]] | + | [[Category:Intergenic]][[Category:NONHSAG055409]][[Category:Transcripts]] |
Latest revision as of 02:51, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT138744 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
976 nt |
| Genomic location |
chrX+:136004249..136075823 |
| Exon number |
3 |
| Exons |
136004249..136004935,136007406..136007511,136075641..136075823 |
| Genome context |
|
| Sequence |
000001 CAGCACCCCG TGTCTAGCTC AGGGTTTGTG AATGCACCAA TCGACACTCC GTATCTAGCT AATCTAGTGG GGACGTGGAG 000080
000081 AACTTTTGAG TCTACCTCAG GGATTATAGA TGCACCAATC AACACCCTGT CAAAACGGAC CAATCAGCGC TCTGTAAAAC 000160 000161 AGACCAATCA GCTCTCAGTA AAATGGACCA ATCAGCAGGA TGTGGGTGGG GCCAGATAAG GGAATAAAAG CAGGCTGCCG 000240 000241 GACCCAGCAG TGGCAAGGCG CTTCGGTTGT CTTCCATGAT GTGGACGCTT TGTTCTTTTG CTCTTTGCAA TAAATCTTCC 000320 000321 TGTTGCTTTC TTTGGGTCCA CACTGCCTTT ATGAGCTGTA ACACTCACCG TGAAGGTCTG AAGCTTTACT CTGGAAGCCA 000400 000401 GTGAGACCAG GAACCCACCG GGAGGAATGA ACGACTCCAG ACACACCGCC TTAAGATCTG TGACACTCAC CGCGAAGGTC 000480 000481 TGCAGCTTCA TTCCTGATCC AGCGAGACCA TGAACCCACC AGAAGGAAAA AACTCCGGAC ACATCCGAAC GTCTAGAAGA 000560 000561 AACAAACTCC AGACACACCG CCTGTAAGAA CTGTAACGGT CACCGCGAGG GTCCGCGGTT TCATTCTTGA AGTCAGTGAG 000640 000641 ACCAAGAACC CACCATTTCT GGACACACTA CCATGCCAGA GATCCAGGGG CTGCAGCATG CTGAAAGAAA ACAGAAGCCT 000720 000721 GTGGAGTGAG CCAAGATCAA CCAGGAAATA AACCCTTTCC CTTGCGATGT CTCTCCAGCG CCCTCTACTG ACATCAGAAT 000800 000801 TGTCTTTGCT GATCTCTTTA TTATGATGAA AATTCTCTGG ATGGAAGGGT CATCAGCTGC CGTCTCCTTT GCTACTCTGC 000880 000881 TAGATATCCT TACAATTTGG TTTAGAATTT TAGTACCACT AACATTTTTT GGTGCATATT TTGGAAATAA AGAAAAGGTA 000960 000961 AACTCTTAAA ATACTG |
Predicted Small Protein
| Name | NONHSAT138744_smProtein_275:403 |
| Length | 43 |
| Molecular weight | 4823.6424 |
| Aromaticity | 0.142857142857 |
| Instability index | 42.05 |
| Isoelectric point | 8.38494873047 |
| Runs | 8 |
| Runs residual | 0.0143158529234 |
| Runs probability | 0.049372902314 |
| Amino acid sequence | MMWTLCSFALCNKSSCCFLWVHTAFMSCNTHREGLKLYSGSQ |
| Secondary structure | LHHHHHHHHHLLLLLLEEEEHHHHHHLLLLHHHHLLLLLLLL |
| PRMN | - |
| PiMo | - |
