Difference between revisions of "NONHSAT026223"
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sequence = <dnaseq>ATGTCCTTAAGTCACAGttaattcatttaatgcacactttaagtgtctactgtcaggcactgtcctagatgtgggaggttcagtaaaaagaaacccacatagtcacacagcctttgtggagctcacatttgaatgTTGCATCAAGTCGAGTTCACCTGATGCATTGTTCTTTACTCCAAGGTGCTTCCAGCTCCATCAGGAGGATTGGGTGGGTGTCCTGGGTCCAGAAGAATGGAGACTACCAACCTCTTTGCTCCTATTACAACCCTCCCTTGCCTGCACCACCCACTGCCCTTACTTTTGCATTTGTTATTCACATCATAGAATTTAAAGCAAGTCACACGGTTTCTCACATTACCTACATTTTACTCAGACGTTCTAGTTCTCATACACATTCTCTTACAACCTTTTCCAGGGCTAACTCCATGGAATGAtttttggtctttttgttttgtcttgttttgtttttgagagagagtcttgctctgtcacccaggcagtggcatggtctcagctcactgtaaactccgcctcccaagttcaagtgtttctcctgGATTCAAG</dnaseq>| | sequence = <dnaseq>ATGTCCTTAAGTCACAGttaattcatttaatgcacactttaagtgtctactgtcaggcactgtcctagatgtgggaggttcagtaaaaagaaacccacatagtcacacagcctttgtggagctcacatttgaatgTTGCATCAAGTCGAGTTCACCTGATGCATTGTTCTTTACTCCAAGGTGCTTCCAGCTCCATCAGGAGGATTGGGTGGGTGTCCTGGGTCCAGAAGAATGGAGACTACCAACCTCTTTGCTCCTATTACAACCCTCCCTTGCCTGCACCACCCACTGCCCTTACTTTTGCATTTGTTATTCACATCATAGAATTTAAAGCAAGTCACACGGTTTCTCACATTACCTACATTTTACTCAGACGTTCTAGTTCTCATACACATTCTCTTACAACCTTTTCCAGGGCTAACTCCATGGAATGAtttttggtctttttgttttgtcttgttttgtttttgagagagagtcttgctctgtcacccaggcagtggcatggtctcagctcactgtaaactccgcctcccaagttcaagtgtttctcctgGATTCAAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(S)]][[Category:NONHSAG010361]] | + | [[Category:Intronic(S)]][[Category:NONHSAG010361]][[Category:Transcripts]] |
Revision as of 10:49, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT026223 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(S) |
| Length |
564 nt |
| Genomic location |
chr12-:7239877..7240440 |
| Exon number |
1 |
| Exons |
7239877..7240440 |
| Genome context |
|
| Sequence |
000001 ATGTCCTTAA GTCACAGtta attcatttaa tgcacacttt aagtgtctac tgtcaggcac tgtcctagat gtgggaggtt 000080
000081 cagtaaaaag aaacccacat agtcacacag cctttgtgga gctcacattt gaatgTTGCA TCAAGTCGAG TTCACCTGAT 000160 000161 GCATTGTTCT TTACTCCAAG GTGCTTCCAG CTCCATCAGG AGGATTGGGT GGGTGTCCTG GGTCCAGAAG AATGGAGACT 000240 000241 ACCAACCTCT TTGCTCCTAT TACAACCCTC CCTTGCCTGC ACCACCCACT GCCCTTACTT TTGCATTTGT TATTCACATC 000320 000321 ATAGAATTTA AAGCAAGTCA CACGGTTTCT CACATTACCT ACATTTTACT CAGACGTTCT AGTTCTCATA CACATTCTCT 000400 000401 TACAACCTTT TCCAGGGCTA ACTCCATGGA ATGAtttttg gtctttttgt tttgtcttgt tttgtttttg agagagagtc 000480 000481 ttgctctgtc acccaggcag tggcatggtc tcagctcact gtaaactccg cctcccaagt tcaagtgttt ctcctgGATT 000560 000561 CAAG |
Predicted Small Protein
| Name | NONHSAT026223_smProtein_158:433 |
| Length | 92 |
| Molecular weight | 10261.6306 |
| Aromaticity | 0.10989010989 |
| Instability index | 77.889010989 |
| Isoelectric point | 9.50823974609 |
| Runs | 10 |
| Runs residual | 0.0235805860806 |
| Runs probability | 0.0944532768062 |
| Amino acid sequence | MHCSLLQGASSSIRRIGWVSWVQKNGDYQPLCSYYNPPLPAPPTALTFAFVIHIIEFKAS HTVSHITYILLRRSSSHTHSLTTFSRANSME |
| Secondary structure | LLLLLLLLLLLLLEEEEEEEEEELLLLLLLLLLLLLLLLLLLLLHHHHHEEEEEEEEELL LLLLEEEEEEEEELLLLLLLLLEEEELLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL |
| PiMo | oooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTT TTTTiiiiiiiiiiiiiiiiiiiiiiiiiii |
