Difference between revisions of "NONHSAT096104"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>ATTTTGGTGGCCGGGCGCGGAGGTGATTCCACACTGAGGCGAGCGCGGCGGCCGGGGTGGTAGTGGCAGTGTTCGTGTGCTCAGGTCTGAATCGCCGAGggaggaggcggtggaggaagaggtggcggcggtggcggtggtcgtagcggtggcggaggaggcggACGAGCAAAAATCAAATTAAAGTAGATCTTGTAGATGAGAATTTTACAGAATTAAGAGGAGAAATAGCAGGACCTCCAGACACACCATATGAAGGAGGAAGATACCAACTAGAGATAAAAATACCAGAAACATACCCATTTAATCCCCCTAAGGTCCGGTTTATCACTAAAATATGGCATCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATATCCTGAAAGATCAATGGGCAGCTGCAATGACTCTCCGCACGGTATTATTGTCATTGCAAGCACTATTGGCAGCTGCAGAGCCAGATGATCCACAGGATGCTGTAGTAGCAAATCAGTACAAACAAAATCCCGAAATGTTCAAACAGACAGCTCGACTTTGGGCACATGTGTATGCTGGAGCACCAGTTTCTAGTCCAGAATACACCAAAAAAATAGAAAACCTATGTGCTATGGGCTTTGATAGGAATGCAGTAATAGTGGCCTTGTCTTCAAAATCATGGGATGTAGAGACTGCAACAGAATTGCTTCTGAGTAACTGAGGCATAGAGAGCTGCTGATATAGTCAAGCTTGCCTCTTCTTGAGGAGCACCAACATCTGTTATTTTTAGGATTCTGCATAGATTTCTTTTAAACTGGCATTCTTGCCTAATGATGTTATCTAGGCACCATTGGAGACTGAAAAAAAAAAATCCCTGCTCTGTAAATAAAGCTAATTAAACGTCTGTGTAAATTTAAAAAGGGGAAATACTTTAATTTTTTTTCTTAATAGTGTAAAAATTCCCTGAGCTAAGCTAAAACCATGGAAGAAACATGCTACTTTAGTGTTTAGCAGTGTACCAAGACTAGCAAGAGTTTGCTTCAGGATTTTGTTGAATAATTAAGATAATATTTTGAGTGTGTCAGGGCCATTCAAATTGTTGGTGTTGCATCACAGCTACCTTAACTGTTTTTAACATGGATCCTCTGTGCCTGTGAATTTACTTGCATGCTTGTACTTGACTTCTTAGGATGGGTAGCTGAAAAGACCACCATTTTAAGCATTTGAGAATTCTTAAATATGAAATTTATTCAGAATTGAAGATGGTGACCTATTCAGAGCCTTTTTGTCCTTGTCAACAGACTGGGACAGTGTCTGATTCCCCCTTCACCCCCCCCACCCCCGCCTTGCCACACACAGCTAATATTCTAATGGTAAATTTCTCTGTATCAGGTGGGGAAATGTGCTGAAGGACAGTATGTATCCCTTGCTTCATTTTTAGGTCGTAGGTTTGGAATGTCTTGTCCCAGTTCTTCAAACACTCTTAAATTTTTCTTAAGTAATGTAAAAATGGAACTGCCAATTTTATTTCTCTTGCAAAAATAGTAAATACTTGATGTTACATTATTCCCAGGTTTAATGAAAGAACCCAACTTAGTTTTTCAGTGAATTTGACACCTATTTTTTAGTGATGAAATTTTTCTTTGAGAACTGGCAAGGATGCAGTCAGCTGTTTGCAGTTTTTAGCCTGATTTTGGGGTCTATAGAGATTGCTTTATTGGATACTTCAAGTCATTCTTGCTTGCACTTCCCCTATTGACACATGAAAGCTGTGTTGGTGTTTTATTGTACATACTTCAGATGCACATAGGAATAGAAGTGTGTTATAAATCTAGCTTTCTTTATGATGTTTCTGATAATACGAGAATTGAAAACTTTACCTTCTCTTGTACATAGTCAGACTATTTGTATTAAATTTACATTTCATTCTAAGTTCAAAAGTTTGAAAATTATTAGTTTTGCAAGATCACACACTAATGTAACCATTTTATGAAGGTTGAAGTGGATTTATGCAGGCAGTTCTATATATAGAAATACAATTCTTTTTAAATTTTTAGGACCAATACAAAATAACAAAAATGTAATGGAATCAGACTGAATTAAAGTAAGGCTGTATATTGAAAGTCATATTATAAAAGGTTTGCTTTCTTTAAGTGTTATTTATCTTAAATTATAATCGTTAAATGTTTGGAAGATAATTTTTGAATCATAACGTCAGCATAACTTCATTTGACTTCTCAATAATCTTGATACTAGAAGCAATAAAAGAACCATTATTA</dnaseq>|
 
sequence = <dnaseq>ATTTTGGTGGCCGGGCGCGGAGGTGATTCCACACTGAGGCGAGCGCGGCGGCCGGGGTGGTAGTGGCAGTGTTCGTGTGCTCAGGTCTGAATCGCCGAGggaggaggcggtggaggaagaggtggcggcggtggcggtggtcgtagcggtggcggaggaggcggACGAGCAAAAATCAAATTAAAGTAGATCTTGTAGATGAGAATTTTACAGAATTAAGAGGAGAAATAGCAGGACCTCCAGACACACCATATGAAGGAGGAAGATACCAACTAGAGATAAAAATACCAGAAACATACCCATTTAATCCCCCTAAGGTCCGGTTTATCACTAAAATATGGCATCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATATCCTGAAAGATCAATGGGCAGCTGCAATGACTCTCCGCACGGTATTATTGTCATTGCAAGCACTATTGGCAGCTGCAGAGCCAGATGATCCACAGGATGCTGTAGTAGCAAATCAGTACAAACAAAATCCCGAAATGTTCAAACAGACAGCTCGACTTTGGGCACATGTGTATGCTGGAGCACCAGTTTCTAGTCCAGAATACACCAAAAAAATAGAAAACCTATGTGCTATGGGCTTTGATAGGAATGCAGTAATAGTGGCCTTGTCTTCAAAATCATGGGATGTAGAGACTGCAACAGAATTGCTTCTGAGTAACTGAGGCATAGAGAGCTGCTGATATAGTCAAGCTTGCCTCTTCTTGAGGAGCACCAACATCTGTTATTTTTAGGATTCTGCATAGATTTCTTTTAAACTGGCATTCTTGCCTAATGATGTTATCTAGGCACCATTGGAGACTGAAAAAAAAAAATCCCTGCTCTGTAAATAAAGCTAATTAAACGTCTGTGTAAATTTAAAAAGGGGAAATACTTTAATTTTTTTTCTTAATAGTGTAAAAATTCCCTGAGCTAAGCTAAAACCATGGAAGAAACATGCTACTTTAGTGTTTAGCAGTGTACCAAGACTAGCAAGAGTTTGCTTCAGGATTTTGTTGAATAATTAAGATAATATTTTGAGTGTGTCAGGGCCATTCAAATTGTTGGTGTTGCATCACAGCTACCTTAACTGTTTTTAACATGGATCCTCTGTGCCTGTGAATTTACTTGCATGCTTGTACTTGACTTCTTAGGATGGGTAGCTGAAAAGACCACCATTTTAAGCATTTGAGAATTCTTAAATATGAAATTTATTCAGAATTGAAGATGGTGACCTATTCAGAGCCTTTTTGTCCTTGTCAACAGACTGGGACAGTGTCTGATTCCCCCTTCACCCCCCCCACCCCCGCCTTGCCACACACAGCTAATATTCTAATGGTAAATTTCTCTGTATCAGGTGGGGAAATGTGCTGAAGGACAGTATGTATCCCTTGCTTCATTTTTAGGTCGTAGGTTTGGAATGTCTTGTCCCAGTTCTTCAAACACTCTTAAATTTTTCTTAAGTAATGTAAAAATGGAACTGCCAATTTTATTTCTCTTGCAAAAATAGTAAATACTTGATGTTACATTATTCCCAGGTTTAATGAAAGAACCCAACTTAGTTTTTCAGTGAATTTGACACCTATTTTTTAGTGATGAAATTTTTCTTTGAGAACTGGCAAGGATGCAGTCAGCTGTTTGCAGTTTTTAGCCTGATTTTGGGGTCTATAGAGATTGCTTTATTGGATACTTCAAGTCATTCTTGCTTGCACTTCCCCTATTGACACATGAAAGCTGTGTTGGTGTTTTATTGTACATACTTCAGATGCACATAGGAATAGAAGTGTGTTATAAATCTAGCTTTCTTTATGATGTTTCTGATAATACGAGAATTGAAAACTTTACCTTCTCTTGTACATAGTCAGACTATTTGTATTAAATTTACATTTCATTCTAAGTTCAAAAGTTTGAAAATTATTAGTTTTGCAAGATCACACACTAATGTAACCATTTTATGAAGGTTGAAGTGGATTTATGCAGGCAGTTCTATATATAGAAATACAATTCTTTTTAAATTTTTAGGACCAATACAAAATAACAAAAATGTAATGGAATCAGACTGAATTAAAGTAAGGCTGTATATTGAAAGTCATATTATAAAAGGTTTGCTTTCTTTAAGTGTTATTTATCTTAAATTATAATCGTTAAATGTTTGGAAGATAATTTTTGAATCATAACGTCAGCATAACTTCATTTGACTTCTCAATAATCTTGATACTAGAAGCAATAAAAGAACCATTATTA</dnaseq>|
 
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[[Category:Sense]]
+
[[Category:Sense]][[Category:NONHSAG037793]]

Revision as of 13:49, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT096104

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2262 nt

Genomic location

chr4+:39699759..39781612

Exon number

7

Exons

39699759..39699922,39739040..39739133,39747372..39747430,39757277..39757359,39776454..39776553,39779302..39779430,39779980..39781612

Genome context

Sequence
000001 ATTTTGGTGG CCGGGCGCGG AGGTGATTCC ACACTGAGGC GAGCGCGGCG GCCGGGGTGG TAGTGGCAGT GTTCGTGTGC 000080
000081 TCAGGTCTGA ATCGCCGAGg gaggaggcgg tggaggaaga ggtggcggcg gtggcggtgg tcgtagcggt ggcggaggag 000160
000161 gcggACGAGC AAAAATCAAA TTAAAGTAGA TCTTGTAGAT GAGAATTTTA CAGAATTAAG AGGAGAAATA GCAGGACCTC 000240
000241 CAGACACACC ATATGAAGGA GGAAGATACC AACTAGAGAT AAAAATACCA GAAACATACC CATTTAATCC CCCTAAGGTC 000320
000321 CGGTTTATCA CTAAAATATG GCATCCTAAT ATTAGTTCCG TCACAGGGGC TATTTGTTTG GATATCCTGA AAGATCAATG 000400
000401 GGCAGCTGCA ATGACTCTCC GCACGGTATT ATTGTCATTG CAAGCACTAT TGGCAGCTGC AGAGCCAGAT GATCCACAGG 000480
000481 ATGCTGTAGT AGCAAATCAG TACAAACAAA ATCCCGAAAT GTTCAAACAG ACAGCTCGAC TTTGGGCACA TGTGTATGCT 000560
000561 GGAGCACCAG TTTCTAGTCC AGAATACACC AAAAAAATAG AAAACCTATG TGCTATGGGC TTTGATAGGA ATGCAGTAAT 000640
000641 AGTGGCCTTG TCTTCAAAAT CATGGGATGT AGAGACTGCA ACAGAATTGC TTCTGAGTAA CTGAGGCATA GAGAGCTGCT 000720
000721 GATATAGTCA AGCTTGCCTC TTCTTGAGGA GCACCAACAT CTGTTATTTT TAGGATTCTG CATAGATTTC TTTTAAACTG 000800
000801 GCATTCTTGC CTAATGATGT TATCTAGGCA CCATTGGAGA CTGAAAAAAA AAAATCCCTG CTCTGTAAAT AAAGCTAATT 000880
000881 AAACGTCTGT GTAAATTTAA AAAGGGGAAA TACTTTAATT TTTTTTCTTA ATAGTGTAAA AATTCCCTGA GCTAAGCTAA 000960
000961 AACCATGGAA GAAACATGCT ACTTTAGTGT TTAGCAGTGT ACCAAGACTA GCAAGAGTTT GCTTCAGGAT TTTGTTGAAT 001040
001041 AATTAAGATA ATATTTTGAG TGTGTCAGGG CCATTCAAAT TGTTGGTGTT GCATCACAGC TACCTTAACT GTTTTTAACA 001120
001121 TGGATCCTCT GTGCCTGTGA ATTTACTTGC ATGCTTGTAC TTGACTTCTT AGGATGGGTA GCTGAAAAGA CCACCATTTT 001200
001201 AAGCATTTGA GAATTCTTAA ATATGAAATT TATTCAGAAT TGAAGATGGT GACCTATTCA GAGCCTTTTT GTCCTTGTCA 001280
001281 ACAGACTGGG ACAGTGTCTG ATTCCCCCTT CACCCCCCCC ACCCCCGCCT TGCCACACAC AGCTAATATT CTAATGGTAA 001360
001361 ATTTCTCTGT ATCAGGTGGG GAAATGTGCT GAAGGACAGT ATGTATCCCT TGCTTCATTT TTAGGTCGTA GGTTTGGAAT 001440
001441 GTCTTGTCCC AGTTCTTCAA ACACTCTTAA ATTTTTCTTA AGTAATGTAA AAATGGAACT GCCAATTTTA TTTCTCTTGC 001520
001521 AAAAATAGTA AATACTTGAT GTTACATTAT TCCCAGGTTT AATGAAAGAA CCCAACTTAG TTTTTCAGTG AATTTGACAC 001600
001601 CTATTTTTTA GTGATGAAAT TTTTCTTTGA GAACTGGCAA GGATGCAGTC AGCTGTTTGC AGTTTTTAGC CTGATTTTGG 001680
001681 GGTCTATAGA GATTGCTTTA TTGGATACTT CAAGTCATTC TTGCTTGCAC TTCCCCTATT GACACATGAA AGCTGTGTTG 001760
001761 GTGTTTTATT GTACATACTT CAGATGCACA TAGGAATAGA AGTGTGTTAT AAATCTAGCT TTCTTTATGA TGTTTCTGAT 001840
001841 AATACGAGAA TTGAAAACTT TACCTTCTCT TGTACATAGT CAGACTATTT GTATTAAATT TACATTTCAT TCTAAGTTCA 001920
001921 AAAGTTTGAA AATTATTAGT TTTGCAAGAT CACACACTAA TGTAACCATT TTATGAAGGT TGAAGTGGAT TTATGCAGGC 002000
002001 AGTTCTATAT ATAGAAATAC AATTCTTTTT AAATTTTTAG GACCAATACA AAATAACAAA AATGTAATGG AATCAGACTG 002080
002081 AATTAAAGTA AGGCTGTATA TTGAAAGTCA TATTATAAAA GGTTTGCTTT CTTTAAGTGT TATTTATCTT AAATTATAAT 002160
002161 CGTTAAATGT TTGGAAGATA ATTTTTGAAT CATAACGTCA GCATAACTTC ATTTGACTTC TCAATAATCT TGATACTAGA 002240
002241 AGCAATAAAA GAACCATTAT TA
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Predicted Small Protein

Name NONHSAT096104_smProtein_410:703
Length 98
Molecular weight 10667.0592
Aromaticity 0.0721649484536
Instability index 44.1164948454
Isoelectric point 4.93609619141
Runs 13
Runs residual 0.00248186330661
Runs probability 0.0481431657902
Amino acid sequence MTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYT
KKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN
Secondary structure LLHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLHHHHHHHHHHHHHHHHLLLLLLHHHH
HHHHHHHHLLLLLLEEEEEELLLLLLHHHHHHHHHLL
PRMN -
PiMo -