Difference between revisions of "ENST00000595084.1"
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sequence = <dnaseq>GTTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCGCCACTTCCCAGGTTCAAGTGGTTCTCCTGCCTCAGCCTCCTGAGTACCTGAAATTACAGGCGCCCGCCACCACGCCAGTCTCAATACCTTCACAGAGGTGAAGAAGCAGCAACCAAATGAATTAGACAGCAACATGATTCCTAGAGAATGGCAAGACCAATTCTTCAACTACTTCTTCAGCATTTCTGAAACATATGGAAGATGGCCCATTGTGCTCTCTTAATTCTTTGATAATCTGGACATTGACTTTTCCATTATATGACCTGGGCTTGTGGGCATCATGTCATAATGCACCTGTTCAGACATCTCCCTGTACCAATATGGATCACTTGAAGAGACTCCTTTGCCCCCATCAAAAAGGATACAGTTGTGTATCTCTTCCATTTTTGTTTACAGTGCCTAAAATTATTTGAGCAGTTTTTCACCTCTTCTCTGATAAACACCTTATTAGTCCTTAAAAAGAAAAGAAAAAAGGAAAATAAAACTTTTATTGAGATCCTA</dnaseq>| | sequence = <dnaseq>GTTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCGCCACTTCCCAGGTTCAAGTGGTTCTCCTGCCTCAGCCTCCTGAGTACCTGAAATTACAGGCGCCCGCCACCACGCCAGTCTCAATACCTTCACAGAGGTGAAGAAGCAGCAACCAAATGAATTAGACAGCAACATGATTCCTAGAGAATGGCAAGACCAATTCTTCAACTACTTCTTCAGCATTTCTGAAACATATGGAAGATGGCCCATTGTGCTCTCTTAATTCTTTGATAATCTGGACATTGACTTTTCCATTATATGACCTGGGCTTGTGGGCATCATGTCATAATGCACCTGTTCAGACATCTCCCTGTACCAATATGGATCACTTGAAGAGACTCCTTTGCCCCCATCAAAAAGGATACAGTTGTGTATCTCTTCCATTTTTGTTTACAGTGCCTAAAATTATTTGAGCAGTTTTTCACCTCTTCTCTGATAAACACCTTATTAGTCCTTAAAAAGAAAAGAAAAAAGGAAAATAAAACTTTTATTGAGATCCTA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000242808.3]] | + | [[Category:Intergenic]][[Category:ENSG00000242808.3]][[Category:NONHSAG036783]] |
Revision as of 14:54, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000595084.1 |
| Source |
Gencode19 |
| Same with |
NONHSAT093516 |
| Classification |
intergenic |
| Length |
540 nt |
| Genomic location |
chr3+:181543416..181554667 |
| Exon number |
2 |
| Exons |
181543416..181543532,181554245..181554667 |
| Genome context |
|
| Sequence |
000001 GTTGGAGTGC AGTGGCGCGA TCTTGGCTCA CTGCAACCGC CACTTCCCAG GTTCAAGTGG TTCTCCTGCC TCAGCCTCCT 000080
000081 GAGTACCTGA AATTACAGGC GCCCGCCACC ACGCCAGTCT CAATACCTTC ACAGAGGTGA AGAAGCAGCA ACCAAATGAA 000160 000161 TTAGACAGCA ACATGATTCC TAGAGAATGG CAAGACCAAT TCTTCAACTA CTTCTTCAGC ATTTCTGAAA CATATGGAAG 000240 000241 ATGGCCCATT GTGCTCTCTT AATTCTTTGA TAATCTGGAC ATTGACTTTT CCATTATATG ACCTGGGCTT GTGGGCATCA 000320 000321 TGTCATAATG CACCTGTTCA GACATCTCCC TGTACCAATA TGGATCACTT GAAGAGACTC CTTTGCCCCC ATCAAAAAGG 000400 000401 ATACAGTTGT GTATCTCTTC CATTTTTGTT TACAGTGCCT AAAATTATTT GAGCAGTTTT TCACCTCTTC TCTGATAAAC 000480 000481 ACCTTATTAG TCCTTAAAAA GAAAAGAAAA AAGGAAAATA AAACTTTTAT TGAGATCCTA |
Predicted Small Protein
| Name | ENST00000595084.1_smProtein_233:451 |
| Length | 73 |
| Molecular weight | 8090.4863 |
| Aromaticity | 0.0972222222222 |
| Instability index | 58.5097222222 |
| Isoelectric point | 6.78851318359 |
| Runs | 11 |
| Runs residual | 0.0118613138686 |
| Runs probability | 0.046763340881 |
| Amino acid sequence | MEDGPLCSLNSLIIWTLTFPLYDLGLWASCHNAPVQTSPCTNMDHLKRLLCPHQKGYSCV SLPFLFTVPKII |
| Secondary structure | LLLLLLLLLLLLLLLEEELLLLLLLLEELLLLLLLLLLLLLLHHHHHHHHLLLLLLLEEE ELLEEEELLLLL |
| PRMN | - |
| PiMo | - |
