Difference between revisions of "NONHSAT021161"
| Line 42: | Line 42: | ||
sequence = <dnaseq>tgggggatggagtcttgctctgttgcccaggctagagtgcagtggtgcgatctcggctcactgcaacctccacctcctgggtttaagcaattctcttggcttagcctcctgagtagctgggattacaggcacacgccaccacaaccagctactttttgtttagtagagacagggtttcgccatgttggccaggctagtcttgaattcctgacctcaagtgatccatccgtcttggcctccaaaagtgctggtattacaagcgtgagccaccatacccggccCAtttatttattttagagacagggtctcactatgttgcccaggctggtcttgaacttctgggctcaagtgatcctcctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcacccagccCAGATATTTATTTTTGAATGAtgctaggctctgaggatgcaaaggttgtttcagttgttattcctgctctgcaggagttcccagtccaggaggagatagTGGCAGGAGTGACaaactatgccccagaaagccaggaaaggctcctctggcaagtgacgttgaactaggacttgaagatcaagtaggagttcaccaggcagacaggatgaggttagctgggatatttcaacagcatggacaacagggcatgagaaaaTGGGAAGAGAGAATGGGCAAGGGGTCATCGATGGACCGGAGATGGGATGGTAGGGACAGAAACTGCAGGGTCCGCAGAAGGAACTGCTCACCGAAAGCCAACAAGCTTGCCCTGTGGAATCCCAGAAAGGCCCAGGAACTTCGGGACATCACTGAAGGCAGAGTGAAGAGAGgaagagaagacagagaaatggaggggagaaaactattaaaataagtaataagaaaactttccccagaagtgcagaatctgaatttccagtataaaagggtccattgagcgccaagaacaatgaaggaaaaaaggtcccactcaggcctacgtatcattgtgaaatttcagaactagagggataaagaaaagatcctaaaagcttcccgagagataaaaaagaagatttttacaaaggatcagcaatcagaattgcctcagactgctcaataaaaacatcagaa</dnaseq>| | sequence = <dnaseq>tgggggatggagtcttgctctgttgcccaggctagagtgcagtggtgcgatctcggctcactgcaacctccacctcctgggtttaagcaattctcttggcttagcctcctgagtagctgggattacaggcacacgccaccacaaccagctactttttgtttagtagagacagggtttcgccatgttggccaggctagtcttgaattcctgacctcaagtgatccatccgtcttggcctccaaaagtgctggtattacaagcgtgagccaccatacccggccCAtttatttattttagagacagggtctcactatgttgcccaggctggtcttgaacttctgggctcaagtgatcctcctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcacccagccCAGATATTTATTTTTGAATGAtgctaggctctgaggatgcaaaggttgtttcagttgttattcctgctctgcaggagttcccagtccaggaggagatagTGGCAGGAGTGACaaactatgccccagaaagccaggaaaggctcctctggcaagtgacgttgaactaggacttgaagatcaagtaggagttcaccaggcagacaggatgaggttagctgggatatttcaacagcatggacaacagggcatgagaaaaTGGGAAGAGAGAATGGGCAAGGGGTCATCGATGGACCGGAGATGGGATGGTAGGGACAGAAACTGCAGGGTCCGCAGAAGGAACTGCTCACCGAAAGCCAACAAGCTTGCCCTGTGGAATCCCAGAAAGGCCCAGGAACTTCGGGACATCACTGAAGGCAGAGTGAAGAGAGgaagagaagacagagaaatggaggggagaaaactattaaaataagtaataagaaaactttccccagaagtgcagaatctgaatttccagtataaaagggtccattgagcgccaagaacaatgaaggaaaaaaggtcccactcaggcctacgtatcattgtgaaatttcagaactagagggataaagaaaagatcctaaaagcttcccgagagataaaaaagaagatttttacaaaggatcagcaatcagaattgcctcagactgctcaataaaaacatcagaa</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG008198]] | + | [[Category:Intergenic]][[Category:NONHSAG008198]][[Category:Transcripts]] |
Latest revision as of 20:31, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT021161 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1123 nt |
| Genomic location |
chr11-:46235493..46242861 |
| Exon number |
3 |
| Exons |
46235493..46235775,46237278..46237442,46242187..46242861 |
| Genome context |
|
| Sequence |
000001 tgggggatgg agtcttgctc tgttgcccag gctagagtgc agtggtgcga tctcggctca ctgcaacctc cacctcctgg 000080
000081 gtttaagcaa ttctcttggc ttagcctcct gagtagctgg gattacaggc acacgccacc acaaccagct actttttgtt 000160 000161 tagtagagac agggtttcgc catgttggcc aggctagtct tgaattcctg acctcaagtg atccatccgt cttggcctcc 000240 000241 aaaagtgctg gtattacaag cgtgagccac catacccggc cCAtttattt attttagaga cagggtctca ctatgttgcc 000320 000321 caggctggtc ttgaacttct gggctcaagt gatcctcctg cctcagcctc ccaaagtgct gggattacag gcgtgagcca 000400 000401 ctgcacccag ccCAGATATT TATTTTTGAA TGAtgctagg ctctgaggat gcaaaggttg tttcagttgt tattcctgct 000480 000481 ctgcaggagt tcccagtcca ggaggagata gTGGCAGGAG TGACaaacta tgccccagaa agccaggaaa ggctcctctg 000560 000561 gcaagtgacg ttgaactagg acttgaagat caagtaggag ttcaccaggc agacaggatg aggttagctg ggatatttca 000640 000641 acagcatgga caacagggca tgagaaaaTG GGAAGAGAGA ATGGGCAAGG GGTCATCGAT GGACCGGAGA TGGGATGGTA 000720 000721 GGGACAGAAA CTGCAGGGTC CGCAGAAGGA ACTGCTCACC GAAAGCCAAC AAGCTTGCCC TGTGGAATCC CAGAAAGGCC 000800 000801 CAGGAACTTC GGGACATCAC TGAAGGCAGA GTGAAGAGAG gaagagaaga cagagaaatg gaggggagaa aactattaaa 000880 000881 ataagtaata agaaaacttt ccccagaagt gcagaatctg aatttccagt ataaaagggt ccattgagcg ccaagaacaa 000960 000961 tgaaggaaaa aaggtcccac tcaggcctac gtatcattgt gaaatttcag aactagaggg ataaagaaaa gatcctaaaa 001040 001041 gcttcccgag agataaaaaa gaagattttt acaaaggatc agcaatcaga attgcctcag actgctcaat aaaaacatca 001120 001121 gaa |
Predicted Small Protein
| Name | NONHSAT021161_smProtein_617:883 |
| Length | 89 |
| Molecular weight | 10594.0986 |
| Aromaticity | 0.0454545454545 |
| Instability index | 58.8522727273 |
| Isoelectric point | 11.3583374023 |
| Runs | 11 |
| Runs residual | 0.00636363636364 |
| Runs probability | 0.0499189028601 |
| Amino acid sequence | MRLAGIFQQHGQQGMRKWEERMGKGSSMDRRWDGRDRNCRVRRRNCSPKANKLALWNPRK AQELRDITEGRVKRGREDREMEGRKLLK |
| Secondary structure | LLHHHHHHHHLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLH HHHHHHHHHLLLLLLHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
