Difference between revisions of "NONHSAT054360"
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sequence = <dnaseq>GAGCTGGGTGTGCTGGGGACTGGCCGCGGACCCCTAACCTGTGTCTCCGGTCTCCCTCCGGAAGCGGCTCAACCCAGCCCATCGCTCTGGCCCCGTTCTGGCCCTGCAGGGTGGTGGTTGGGACGTTGAAATGAGCGCGCGAGTGATTGGCTGGTGGACAGAAGGCACTGCAGCCTGAAATGGCAGAGTCTGGTGCTGACGATCCGCGAGAAGATCAATGCTGCCATCCAGGACATGCCAGAGAGCGAAGAGATCGCCCAGCTGCTGTCTGGGTCCTGTGAGTGCTTAGGGGCTGTCACTGGAGTCCCCTCTTTGCTGAGGTAGTATGTATCAGCTGAGCTACTCTCTTGTTATTTAGCCACCAGGGCTGGCCTTTAGAGAGGGAGCGATTTTTATTTGAGGTATAGATGCTGGCTTCTTCCACTATGAAATGATTTAGGGAAAAGCTACACACTAAAGTTACTGGCAGTATATTATACATG</dnaseq>| | sequence = <dnaseq>GAGCTGGGTGTGCTGGGGACTGGCCGCGGACCCCTAACCTGTGTCTCCGGTCTCCCTCCGGAAGCGGCTCAACCCAGCCCATCGCTCTGGCCCCGTTCTGGCCCTGCAGGGTGGTGGTTGGGACGTTGAAATGAGCGCGCGAGTGATTGGCTGGTGGACAGAAGGCACTGCAGCCTGAAATGGCAGAGTCTGGTGCTGACGATCCGCGAGAAGATCAATGCTGCCATCCAGGACATGCCAGAGAGCGAAGAGATCGCCCAGCTGCTGTCTGGGTCCTGTGAGTGCTTAGGGGCTGTCACTGGAGTCCCCTCTTTGCTGAGGTAGTATGTATCAGCTGAGCTACTCTCTTGTTATTTAGCCACCAGGGCTGGCCTTTAGAGAGGGAGCGATTTTTATTTGAGGTATAGATGCTGGCTTCTTCCACTATGAAATGATTTAGGGAAAAGCTACACACTAAAGTTACTGGCAGTATATTATACATG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG022062]] | + | [[Category:Sense]][[Category:NONHSAG022062]][[Category:Transcripts]] |
Latest revision as of 22:20, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT054360 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
482 nt |
| Genomic location |
chr17+:46048531..46051221 |
| Exon number |
2 |
| Exons |
46048531..46048675,46050885..46051221 |
| Genome context |
|
| Sequence |
000001 GAGCTGGGTG TGCTGGGGAC TGGCCGCGGA CCCCTAACCT GTGTCTCCGG TCTCCCTCCG GAAGCGGCTC AACCCAGCCC 000080
000081 ATCGCTCTGG CCCCGTTCTG GCCCTGCAGG GTGGTGGTTG GGACGTTGAA ATGAGCGCGC GAGTGATTGG CTGGTGGACA 000160 000161 GAAGGCACTG CAGCCTGAAA TGGCAGAGTC TGGTGCTGAC GATCCGCGAG AAGATCAATG CTGCCATCCA GGACATGCCA 000240 000241 GAGAGCGAAG AGATCGCCCA GCTGCTGTCT GGGTCCTGTG AGTGCTTAGG GGCTGTCACT GGAGTCCCCT CTTTGCTGAG 000320 000321 GTAGTATGTA TCAGCTGAGC TACTCTCTTG TTATTTAGCC ACCAGGGCTG GCCTTTAGAG AGGGAGCGAT TTTTATTTGA 000400 000401 GGTATAGATG CTGGCTTCTT CCACTATGAA ATGATTTAGG GAAAAGCTAC ACACTAAAGT TACTGGCAGT ATATTATACA 000480 000481 TG |
Predicted Small Protein
| Name | NONHSAT054360_smProtein_179:280 |
| Length | 34 |
| Molecular weight | 3732.0695 |
| Aromaticity | 0.030303030303 |
| Instability index | 48.5727272727 |
| Isoelectric point | 5.42510986328 |
| Runs | 5 |
| Runs residual | 0.0326086956522 |
| Runs probability | 0.0111641052818 |
| Amino acid sequence | MAESGADDPREDQCCHPGHARERRDRPAAVWVL |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHLLLLLLEEEL |
| PRMN | - |
| PiMo | - |
