Difference between revisions of "NONHSAT083181"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GCCGGGGCCGAGCCCTCCGCGACGCCAGCCGGGCCATGGGGGCCGCACGCAGCCCGCCGTCCGCTGTCCCGGGGCCCCTGCTGGGGCTGCTCCTGCTGCTCCTGGGCGTGCTGGCCCCGGGTGGCGCCTCCCTGCGACTCCTGGACCACCGGGCGCTGGTCTGCTCCCAGCCGGGGCTAAACTGCACGGTCAAGAATAGTAAGTCATCTTTTTCTGTTCTTCTTCTTGTTGCCTTCTTAATCAAGTGAGAGCCTGCTGCCAACTTCTGACAGAAGTCTTGCCATGCCACTCCAGGTTCAGGCTGTGAGCTACAGCCATCCGCAGGAGGGTTCCCGGAGAATTGTGGATGCGTGCACCTGCGCTTCCTGTCGAGAACATTCATTATGCAAAAGTCAGGAAAGGAGAAACAGAACTGTCATTTGGATTGTGAAAGTATTCTCTGGGGAGCTGCCCTACTGTATCTATAATATAATTTGATTTGCCACAGCTTGTCACTGTAAAGTGAGAGACATCTGTGCTGTTGATTTTGTTTTGTTTTAATTCAAAGAGGCACATATTCAAGTGTCTGAGCCAATTAGAGACCCCTGACATATAACAATAAAGCAGCTCTTACTACAACTG</dnaseq>| | sequence = <dnaseq>GCCGGGGCCGAGCCCTCCGCGACGCCAGCCGGGCCATGGGGGCCGCACGCAGCCCGCCGTCCGCTGTCCCGGGGCCCCTGCTGGGGCTGCTCCTGCTGCTCCTGGGCGTGCTGGCCCCGGGTGGCGCCTCCCTGCGACTCCTGGACCACCGGGCGCTGGTCTGCTCCCAGCCGGGGCTAAACTGCACGGTCAAGAATAGTAAGTCATCTTTTTCTGTTCTTCTTCTTGTTGCCTTCTTAATCAAGTGAGAGCCTGCTGCCAACTTCTGACAGAAGTCTTGCCATGCCACTCCAGGTTCAGGCTGTGAGCTACAGCCATCCGCAGGAGGGTTCCCGGAGAATTGTGGATGCGTGCACCTGCGCTTCCTGTCGAGAACATTCATTATGCAAAAGTCAGGAAAGGAGAAACAGAACTGTCATTTGGATTGTGAAAGTATTCTCTGGGGAGCTGCCCTACTGTATCTATAATATAATTTGATTTGCCACAGCTTGTCACTGTAAAGTGAGAGACATCTGTGCTGTTGATTTTGTTTTGTTTTAATTCAAAGAGGCACATATTCAAGTGTCTGAGCCAATTAGAGACCCCTGACATATAACAATAAAGCAGCTCTTACTACAACTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG033185]] |
Revision as of 09:25, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT083181 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
621 nt |
| Genomic location |
chr22+:17565947..17578399 |
| Exon number |
2 |
| Exons |
17565947..17566119,17577952..17578399 |
| Genome context |
|
| Sequence |
000001 GCCGGGGCCG AGCCCTCCGC GACGCCAGCC GGGCCATGGG GGCCGCACGC AGCCCGCCGT CCGCTGTCCC GGGGCCCCTG 000080
000081 CTGGGGCTGC TCCTGCTGCT CCTGGGCGTG CTGGCCCCGG GTGGCGCCTC CCTGCGACTC CTGGACCACC GGGCGCTGGT 000160 000161 CTGCTCCCAG CCGGGGCTAA ACTGCACGGT CAAGAATAGT AAGTCATCTT TTTCTGTTCT TCTTCTTGTT GCCTTCTTAA 000240 000241 TCAAGTGAGA GCCTGCTGCC AACTTCTGAC AGAAGTCTTG CCATGCCACT CCAGGTTCAG GCTGTGAGCT ACAGCCATCC 000320 000321 GCAGGAGGGT TCCCGGAGAA TTGTGGATGC GTGCACCTGC GCTTCCTGTC GAGAACATTC ATTATGCAAA AGTCAGGAAA 000400 000401 GGAGAAACAG AACTGTCATT TGGATTGTGA AAGTATTCTC TGGGGAGCTG CCCTACTGTA TCTATAATAT AATTTGATTT 000480 000481 GCCACAGCTT GTCACTGTAA AGTGAGAGAC ATCTGTGCTG TTGATTTTGT TTTGTTTTAA TTCAAAGAGG CACATATTCA 000560 000561 AGTGTCTGAG CCAATTAGAG ACCCCTGACA TATAACAATA AAGCAGCTCT TACTACAACT G |
Predicted Small Protein
| Name | NONHSAT083181_smProtein_35:247 |
| Length | 71 |
| Molecular weight | 7133.5781 |
| Aromaticity | 0.0285714285714 |
| Instability index | 46.3814285714 |
| Isoelectric point | 10.3208618164 |
| Runs | 11 |
| Runs residual | 0.0123055162659 |
| Runs probability | 0.058855647091 |
| Amino acid sequence | MGAARSPPSAVPGPLLGLLLLLLGVLAPGGASLRLLDHRALVCSQPGLNCTVKNSKSSFS VLLLVAFLIK |
| Secondary structure | LLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLLHHHHHLLEEEELLLLLLEEEELLLLLHH HHHHHHHHHL |
| PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHH HHHHHHHHHH |
| PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiTTTTTTTT TTTTTTTTTT |
