Difference between revisions of "NONHSAT113918"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GTGAGGTGCTATTGGCATGCACTGAGTGAAGTTGGTTGAAATTTACACAGAGTTGGCTGCCACAATATGGGCTGAGCTGGAACAAGAGGTCAGAGGCCACAGAGAAAGAGATCATCAACTGCAGTTGCAAAATCCATCATGATATTTGCTGTAAACAGGATATCTAATTCAGCTGGAGCATCTCCATAAAGATTGTTCTAGGCCTCTCTGGGGATCTTCAATGTCCCAGGGCAAACTCTTCACTGTCAACTCTTTTCTGAAAGAGTGCAATGATTTCAGGATCAATGATTTCTGAAAATGAACATTTTTAATAAAGCAGCTCTGGACTGTGATTCCTAACTATTGGGGCATTGGCATTAAAGAAAAGAGATTGGACATTTTGAACCTTGTGTGTGTCAAAATGAAACTTTTTGTCCCTGGATATGTTGAGACGGGAAGAAGGAAAATCTGATTCTATGGTTTACTACACTCCAGGAATTATCATCCCTCTAACACCACACATGATGGAAAGAGAAAACTTGGGGCTCAATGGTTGCTCCCAAAGAGTACCCAAATGCTGGTCCATGAGCTGAGACTGGGCACCTCACACTAC</dnaseq>| | sequence = <dnaseq>GTGAGGTGCTATTGGCATGCACTGAGTGAAGTTGGTTGAAATTTACACAGAGTTGGCTGCCACAATATGGGCTGAGCTGGAACAAGAGGTCAGAGGCCACAGAGAAAGAGATCATCAACTGCAGTTGCAAAATCCATCATGATATTTGCTGTAAACAGGATATCTAATTCAGCTGGAGCATCTCCATAAAGATTGTTCTAGGCCTCTCTGGGGATCTTCAATGTCCCAGGGCAAACTCTTCACTGTCAACTCTTTTCTGAAAGAGTGCAATGATTTCAGGATCAATGATTTCTGAAAATGAACATTTTTAATAAAGCAGCTCTGGACTGTGATTCCTAACTATTGGGGCATTGGCATTAAAGAAAAGAGATTGGACATTTTGAACCTTGTGTGTGTCAAAATGAAACTTTTTGTCCCTGGATATGTTGAGACGGGAAGAAGGAAAATCTGATTCTATGGTTTACTACACTCCAGGAATTATCATCCCTCTAACACCACACATGATGGAAAGAGAAAACTTGGGGCTCAATGGTTGCTCCCAAAGAGTACCCAAATGCTGGTCCATGAGCTGAGACTGGGCACCTCACACTAC</dnaseq>| | ||
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| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG044319]] |
Revision as of 11:54, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT113918 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
592 nt |
| Genomic location |
chr6+:88494578..88621448 |
| Exon number |
5 |
| Exons |
88494578..88494685,88494829..88494980,88619500..88619632,88620397..88620516,88621370..88621448 |
| Genome context |
|
| Sequence |
000001 GTGAGGTGCT ATTGGCATGC ACTGAGTGAA GTTGGTTGAA ATTTACACAG AGTTGGCTGC CACAATATGG GCTGAGCTGG 000080
000081 AACAAGAGGT CAGAGGCCAC AGAGAAAGAG ATCATCAACT GCAGTTGCAA AATCCATCAT GATATTTGCT GTAAACAGGA 000160 000161 TATCTAATTC AGCTGGAGCA TCTCCATAAA GATTGTTCTA GGCCTCTCTG GGGATCTTCA ATGTCCCAGG GCAAACTCTT 000240 000241 CACTGTCAAC TCTTTTCTGA AAGAGTGCAA TGATTTCAGG ATCAATGATT TCTGAAAATG AACATTTTTA ATAAAGCAGC 000320 000321 TCTGGACTGT GATTCCTAAC TATTGGGGCA TTGGCATTAA AGAAAAGAGA TTGGACATTT TGAACCTTGT GTGTGTCAAA 000400 000401 ATGAAACTTT TTGTCCCTGG ATATGTTGAG ACGGGAAGAA GGAAAATCTG ATTCTATGGT TTACTACACT CCAGGAATTA 000480 000481 TCATCCCTCT AACACCACAC ATGATGGAAA GAGAAAACTT GGGGCTCAAT GGTTGCTCCC AAAGAGTACC CAAATGCTGG 000560 000561 TCCATGAGCT GAGACTGGGC ACCTCACACT AC |
Predicted Small Protein
| Name | NONHSAT113918_smProtein_422:571 |
| Length | 50 |
| Molecular weight | 5643.5674 |
| Aromaticity | 0.0612244897959 |
| Instability index | 49.2 |
| Isoelectric point | 7.81549072266 |
| Runs | 9 |
| Runs residual | 0.0216216216216 |
| Runs probability | 0.0318161298554 |
| Amino acid sequence | MLRREEGKSDSMVYYTPGIIIPLTPHMMERENLGLNGCSQRVPKCWSMS |
| Secondary structure | LLLLLLLLLLLEEEELLLEEELLLLLLHHHHLLLLLLLLLLLLLEEELL |
| PRMN | - |
| PiMo | - |
